Natranaerobius thermophilus: Nther_0139
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Entry
Nther_0139 CDS
T00761
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nth
Natranaerobius thermophilus
Pathway
nth03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Nther_0139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nth03400
]
Nther_0139
Enzymes [BR:
nth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Nther_0139
DNA repair and recombination proteins [BR:
nth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Nther_0139
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ACB83738
UniProt:
B2A484
LinkDB
All DBs
Position
162817..163737
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AA seq
306 aa
AA seq
DB search
MRYMVNSQTLDVHGREVVLTNLLKPIWPEKDITKYDLIKYFLDMSPYILPHLKNRPLVIT
RFPEGVHKEGFYQKDIKKAGNSPSWLKTITIPTKNKERERQVIDYLVVDHPATLVWLGNL
AAVELHPWLSSVESLDYPDFGVFDLDPMPQADFYQVKTLAFSIKKILNQLEITGYPKLTG
SSGLQIFVPFYPKYTYQEIREFIHKVCLQVLDHHADIATIERKVNQRPSHKVYLDYLQNA
KGKTISAIYGPRANKGAHVSVPVNWEELANIETSRQYDVLSVGARMKNTGDVFKTILENK
QKLNFC
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
ttgagatatatggtcaatagtcaaaccttagatgtccacggacgcgaagttgtgttaact
aatttattaaaacctatctggccagaaaaagatattacaaaatatgacttaatcaaatac
tttcttgatatgtcaccttatatattgccccatttaaaaaatcgtcctttggttataact
aggttccctgaaggtgtgcataaggaaggattttatcagaaagatattaagaaagcaggt
aattcaccttcctggttaaaaacaattacaattccgactaaaaataaagaaagagaaaga
caagttatagactatttagttgtagatcatccagcaactttggtatggctggggaattta
gcggctgtagaacttcatccatggttatcaagtgtagagtctttagattatccggatttt
ggtgtttttgacttagatcccatgccccaagctgacttttatcaagttaaaactctagct
ttcagtatcaaaaaaattttaaatcagcttgagataacaggttatcccaagctgacaggc
tctagtggcttacaaatatttgtacctttttatcccaaatatacttatcaagaaatccga
gaattcattcataaagtatgtttgcaggttttggatcaccatgctgatattgcaacgatt
gagcgcaaagtaaatcagcgtccctctcataaggtttatctggattatttgcaaaatgca
aaaggtaaaacaatttctgctatttatggccctagagccaacaagggcgctcatgtgtcg
gttccggttaactgggaggaactggcgaatattgaaacatcccgacagtatgatgtgcta
tctgtaggagctcggatgaaaaataccggcgatgtatttaaaaccatcttagagaataaa
caaaaattaaacttttgctaa
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