Nitrospira tepida: DNFV4_02901
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Entry
DNFV4_02901 CDS
T09383
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nti
Nitrospira tepida
Pathway
nti03030
DNA replication
nti03430
Mismatch repair
nti03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DNFV4_02901
03430 Mismatch repair
DNFV4_02901
03440 Homologous recombination
DNFV4_02901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nti03032
]
DNFV4_02901
03400 DNA repair and recombination proteins [BR:
nti03400
]
DNFV4_02901
Enzymes [BR:
nti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DNFV4_02901
DNA replication proteins [BR:
nti03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DNFV4_02901
DNA repair and recombination proteins [BR:
nti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DNFV4_02901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF5796
Cucumopine_C
Motif
Other DBs
NCBI-ProteinID:
CAI4032471
UniProt:
A0AA86N0M2
LinkDB
All DBs
Position
NsDNF:complement(2942003..2945602)
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AA seq
1199 aa
AA seq
DB search
MSVSLRPSREHVSEHAASGSTRLTRACLASSAPFDFPSLPSYNPFHVFTMPPQFVHLHLH
TQYSLLDGANQIDPLMKQIKGFGQPAVAMTDHGNMFGAVEFYRKAKEAGVKAIIGCEAYM
APGSRFAKDSGLAHNDYYHLILLARNLTGYQNLIKLVSKAYLEGFYYKPRMDKELLQQHH
EGLIALSGCLSGEVAYLIGQKDLEGATRVAGEYREIFGKDHYYLEVQANGLEHQRIANLG
LLDIHKKLDIPLAGTNDCHYLKKEDSRPHDLMLCLQTGKTINDPNRMKFDTDQLYVKSTD
EVVREFAELPDAVTNTVRIAEQCDLQLTLNKTYLPQYKVPDGYTRETYLEHLAIEGLAAR
LKERPSSLPALHYEVRLREELAIICTMGFAGYFLIVWDIIKFARSRGIPVGPGRGSAAGS
LVAYALRITDLDPLVYSLLFERFLNPERVSLPDIDMDFCMDRRGEVINYVVDKYGSDHVA
QIITFGTLGAKAAIRDVGRVMEIPYAEVDKVAKLVPNQLNITLQQALDQEPKLKELVETE
PKFKELMSIAQSLEGLARHASTHAAGVVISEEPLTDHVPLYKGANDEVVTQYSMGDVEKI
GLVKFDFLGLKTLTMIRHAERLVNDTHPDLSFSVERIPFDDAKTFALLSSGKTTGLFQLE
SSGMRDLLTGLRPDRFEDIIAIIALYRPGPMDLIPDFIKRKQGKIAISYEMPELEPILKD
TYGIIVYQEQVMAIANKVAGFSLGQADILRRAMGKKKPEEMEKLKAKFLEGAKGKKVSEK
KAEKLYDLIQKFAGYGFNKSHAAAYAVVCYQTAYLKTHYPTEFMAALLTSEMGNSDKLVG
YFTECRDLGIKILPPDVNESQKSFAVVDGSIRCGLAAIKNVGEGAVESVIEIRKDAGRFR
SFFDFCRRVDLHKVNKRMMEGLIKAGAFDSMGAKRAQLMAVLDQAMEEGAAAQRERASGQ
TSIFGDMGAEDEPSAVSDPPLPTVPEWDQAQRLKFERELTGFYITGHPLARYEAAVRSFA
TATTQTLVEIGDGKEVRLAGIIATVKNLVTKKGDKMAYVTVEDLQGTAEIIVFPDLYKTA
SELLVPERVVRITGTVDRGEKGTKIRGVKVELLAELQAKAISKVNIKVMDTPEAGLQLSR
LQEVFQRHPGSTMVYLTFRVGSDYEADTAPLPTIKVTPSEYFVADVEEVLGKGVVGLVT
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggtctcattgcggccgtcgagggagcatgtttccgagcatgcggcctccgggagc
acaagactgacacgggcatgcctcgcctcctctgctccgtttgacttcccctccctcccc
tcctacaatccgtttcacgttttcaccatgccaccgcaattcgtccacctgcacctccat
acccagtacagcctcctcgacggcgccaaccaaattgatccgctcatgaagcagatcaaa
ggcttcggccaaccggcggtggccatgaccgaccatggcaacatgttcggggcggtcgag
ttctaccgcaaggccaaggaggccggggtgaaggccattatcggctgcgaggcctacatg
gcgccgggaagccgctttgccaaggacagtgggcttgcccacaacgactactaccacctg
atcctgctcgcgcggaacctcaccggctatcagaatctgatcaagttggtcagtaaagcg
tatcttgaaggattctattataagccacggatggacaaggaattattgcagcaacatcac
gagggattgatcgcgctctccggctgcttgagcggagaggtggcctatctgatcgggcag
aaggacctggagggagccacccgcgtggccggcgaataccgggagatcttcgggaaggac
cattactacctcgaagtacaggcgaacgggttggagcaccaacgcatcgcgaaccttggc
ttgctggacattcataagaaactcgacattccgctcgccggcaccaacgactgccactac
ctcaaaaaggaagactcccgtcctcacgatttgatgctctgcctgcaaaccggcaagacg
atcaacgatccaaaccgcatgaagttcgatacggatcaactgtatgtgaagtccacggac
gaagtcgtccgagagtttgccgagttgccggacgcggtgaccaacacggtgcggattgct
gagcagtgcgatcttcaattgacgttgaacaaaacctacctgccccaatacaaggtgccg
gacggttatacccgtgagacctatctcgagcacctggcgatcgagggcctggcggcgcga
ttgaaagaacggcccagcagtttgccggccctgcactatgaggtccgcctgcgcgaggaa
ttggccatcatctgcacgatggggttcgccggctattttctgatcgtctgggacatcatc
aagtttgcccgttcgcgcggcatccctgtcgggcctggccgcggctccgcggcgggaagt
ctggtcgcctatgccttgcggattaccgatttggatccgctggtctacagcctcctgttc
gagcggttcctgaatcctgagcgcgtctccctgcccgacatcgacatggatttctgcatg
gaccgccgtggcgaagtcatcaactacgtggtggacaaatacggctctgaccatgtggcg
cagatcatcacgttcggcacgctcggcgccaaggccgccatccgcgacgtggggcgcgtg
atggagatcccctacgcggaggtggacaaggtcgccaaattagtcccgaaccaactcaat
atcacgttgcagcaggcgctggaccaggaacccaagctcaaggagctggtcgagaccgag
cccaaattcaaggagttgatgtcgatcgcgcaatcgctggaaggattggcgcgtcatgcc
tcgacccacgcggcgggcgtcgtgatatctgaggaaccgctgacggatcatgtgccgctc
tacaagggggccaacgacgaagtcgtgacccaatattcgatgggcgacgtcgaaaagatc
gggctggtgaagttcgactttctcggtctgaagacgctcacgatgatccgccacgccgaa
cggctcgtcaacgacacgcatcccgacctctcgttttccgtcgagcggattccgttcgac
gacgccaagacctttgcgctgctttcctccggcaaaacgaccggcctgttccagttggaa
agctcgggcatgcgcgatctgctgaccgggctccggccggaccggttcgaggacatcatc
gccatcatcgcgctctaccggccggggccgatggacctgatcccggacttcatcaagcgc
aagcagggcaagatcgcgatctcctacgagatgcccgaactggagccgatcctgaaggac
acctacgggatcatcgtctatcaggaacaggtcatggccatcgccaacaaggtggccggg
ttctcgctgggacaggccgacattctccggcgggcgatggggaagaagaagccggaggag
atggagaagctcaaggccaagttcctggaaggcgccaagggcaaaaaggtttcggagaag
aaggccgagaaactctatgacctgatccagaaattcgccgggtatggatttaacaagtcg
cacgcggcggcctacgcggtggtctgttaccagaccgcctacctcaagacccactacccg
accgaattcatggcggcgctgctcacgagcgaaatggggaactcggacaaactggtcggc
tatttcacggaatgtcgggacctcggcatcaagatcctgccgccggacgtgaacgagagc
cagaagagctttgcggtggtggacggcagcatccgctgcgggttggcggcgatcaagaac
gtgggggaaggggccgtcgaatcggtcattgagatccggaaggacgccggacggttccgg
tccttctttgatttttgccggcgcgtggacctgcacaaggtcaataaacgcatgatggaa
gggctgatcaaggccggcgccttcgattcgatgggggccaagcgggcgcagctcatggcc
gtgctggaccaggcgatggaggagggggcggcggcgcaacgggaacgggcgagcgggcag
accagcatcttcggcgacatgggggccgaggacgaaccctccgcagtcagcgatcccccg
ctcccgaccgtcccggaatgggaccaggcgcagcggttgaagttcgaacgggagttgacc
gggttctatatcaccgggcatcccttggctcgatacgaagccgcggtccgaagcttcgcc
accgcgacaacccagaccctcgtggagatcggggatggcaaggaagtccggctggccggg
atcattgcgacggtcaagaatctcgtgaccaagaagggcgataagatggcctatgtgacg
gtggaggacctccaggggacggcggagatcatcgtcttcccggacctctataagaccgcc
tccgaactgctggtgccggaacgggtggtccggatcaccggcaccgtggaccggggtgaa
aaggggaccaagattcgaggggtcaaggtcgagctgttggccgagctccaggccaaggcc
atcagcaaggtgaatatcaaggtcatggatacgccagaggcgggcctccagctcagccgc
ctccaggaggtgtttcagcggcatcccggctccactatggtatatttgaccttcagggtc
gggtcggattatgaagccgacacggcccccctccccacaatcaaggtcacccccagcgag
tacttcgtggcggatgttgaagaagtactaggcaaaggggtggtcggtttggtaacatga
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integrated database retrieval system
