Nitrospira tepida: DNFV4_03251
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Entry
DNFV4_03251 CDS
T09383
Name
(GenBank) 3'-phosphoesterase / DNA ligase D / DNA repair polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nti
Nitrospira tepida
Pathway
nti03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DNFV4_03251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nti03400
]
DNFV4_03251
Enzymes [BR:
nti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DNFV4_03251
DNA repair and recombination proteins [BR:
nti03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DNFV4_03251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAI4032821
UniProt:
A0AA86T704
LinkDB
All DBs
Position
NsDNF:complement(3316950..3319580)
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AA seq
876 aa
AA seq
DB search
MGLRQYWNKRNFKKTPEPRGHAKPASGRWQFVIQKHAASRLHYDFRLELDGTLKSWAVPK
GPSLNPSDKRLAVHVEDHPLDYADFEGIIPPKQYGAGTVLLWDRGTWSPIGDPRSGYRRG
RLKFLLFGRKLRGAWNLVRMGSRGEKGKEHWLLIKEDDEEANRGKDRDITTLTESVASGR
TMEQIAADRRRVWQSNRDGRSKTRSRAKPKALDPAEVPRSRKAAMAEWAPPQLATLVDRT
PEGADWVHELKYDGYRILCSIRDGRAKLFTRNGHDWTSRLQRLAHAAEGLPVREAWLDGE
IVAVEPDGTISFQSLQNSFDTRSEANLVYYLFDLLYLDGYDLRSVALVERKRLLASLLES
MGPSPLIRYSDHIEGRGEVVFAEACRRGMEGLVSKKAAASYHAGRNRNWVKVKCGQRQEF
VIGGFTDPSGARVGFGALLLGVHDEQGRLRFVGRTGTGFSERSLRQLHRRLTALEHTTSP
FVNPPTGSEARGVHWVRPELVAEVAFAQWTGDGLLRQASFQGLREDKPAKEIVMEQPERK
RQQDDREGRAARARRRRWAGIRAGRRNKPSAGDGRSANGPTMVAGVTLSHPDRVLYPEQG
LTKIGLARYYEQVADWIMPHLEQRPLTLVRCPEGRAAECFYQKHAKDTVPEIVGRVKVQE
NRKTAVYMTADSLPALIGLVQMGVLELHTWGARRDRLDRPDRLVVDLDPDPEVPWKSVVE
AAQLVRSLFHELELECFLKTTGGKGLHVVAPLQQVHAWDEVKSFSRALAEHLARLIPDRF
VANMSKQKRKGKIYLDFLRNAKGATAIAPYSTRAKPRAPVSVPLTWDELSVDLRSDHFTV
ANVPGRLAELRRDPWKDYFTVKQRLTGRMVRALGMR
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggccttcggcaatattggaacaagcggaacttcaagaagaccccggagccgcgggga
cacgccaagcctgcgtccggacgatggcaattcgtcattcaaaaacatgccgccagccgg
ttgcattatgatttccgattggagttggacgggacgctgaaaagttgggccgtcccaaaa
ggtcccagcctgaacccctctgataaacgccttgccgttcacgtcgaagaccatccgctg
gattacgccgatttcgaagggatcatcccgcccaaacagtatggagcggggacggtcctg
ctgtgggaccgaggaacctggtctccgatcggagatccgcggagcggataccggcgcggc
aggctgaaattcctcctgttcggccggaaactccggggagcttggaacctggtccgcatg
gggtcccgtggagaaaagggcaaggaacactggttgctgatcaaggaggacgatgaggaa
gccaaccgcggcaaggatcgtgacattaccacgctgacagagagcgtggccagcggacga
accatggaacagatcgccgccgaccgccggagagtgtggcagtccaaccgcgacggtcgt
tccaaaacgaggtccagggcgaagccgaaggcgctcgatcccgccgaggttccgcggtcg
cggaaggcggccatggccgagtgggcgccgccccagcttgcgacgctcgtcgacaggacg
cctgaaggggctgactgggtccatgagctcaagtacgacggctaccgcatcctctgctcg
attcgtgacggccgggcgaagctgttcaccaggaacggccatgactggacgtccaggttg
cagcgcctcgctcacgcggcggaaggtttaccggtcagggaggcctggctggacggagag
atcgtcgccgtcgagccggacgggacgatcagttttcaatcgcttcagaattcgtttgat
acgcgatccgaagccaatctggtttactatctgttcgaccttctctatctcgacggctat
gacctccggtccgttgcgctggtcgagcgcaaacgcctgctcgcctcgctgctggaatcc
atggggccgtcgccgttgatccggtacagcgatcacattgaagggcggggagaggtcgtc
ttcgccgaggcctgccgtcgtgggatggagggattggtgtcgaagaaggccgcggcatcc
tatcatgccgggcgtaacaggaactgggtcaaggtcaaatgcggacagcgacaggaattc
gtgatcggcggatttacggacccctccggggcgcgagtggggttcggggcattgcttttg
ggcgtccatgatgaacagggacggctgcggtttgtcggcaggaccggaaccggattttcc
gagcgatcgctcaggcaattgcatcggcggctgaccgcgctcgagcacacgacatcgccg
ttcgtcaatccgccgaccggctccgaggcccgcggggtccattgggtgagacctgaactg
gtggccgaagtggccttcgcgcaatggaccggcgacgggctgcttcgccaagcctcgttt
caaggtttgcgggaggataagccggcgaaggagatcgtcatggaacagccggaacggaag
cggcagcaagatgatcgtgaggggcgggcagccagggctcggcgccgccgctgggccggc
atccgagccggacggcggaacaaaccatctgccggagacgggagatccgcgaacggtccg
accatggtcgccggcgtcaccctgtctcatcctgatcgtgtgctctatcccgagcagggc
ctgaccaaaatcgggctggctcgatactacgagcaggtggccgactggatcatgccgcat
cttgaacagcgacccttgacgcttgtccgttgcccggaaggccgagccgccgaatgcttc
tatcaaaagcacgcgaaggacacggtgcctgagatcgtaggccgggtgaaagttcaagaa
aaccgaaagacggccgtctacatgacggcggattcgttgcccgcgctgatcgggctcgtg
cagatgggcgtgctcgaactgcatacctggggagcgcgacgagaccgcctcgaccggccc
gatcgcctcgtcgtcgatctggatccggacccggaggtgccctggaaatccgtcgtcgaa
gcagcgcagctcgtccggagtttattccacgaattggagctggagtgctttctcaagacc
accggcggcaagggcctccatgtagtcgcgccgcttcaacaggtccatgcctgggatgag
gtgaaatccttttcgagagcccttgccgagcatctcgcccggctcattcccgatcggttt
gtcgcgaacatgtcgaaacagaagcgcaaaggaaaaatctatctcgattttctgcggaac
gcgaagggagcgaccgcgatcgccccctattcgacccgtgccaaaccccgcgccccggtc
tcggtgccgttgacctgggatgaattgtcggttgatcttcgctccgaccatttcacggtc
gccaacgtcccgggccgcttggcagaattgcgccgggacccatggaaagactacttcacg
gtcaagcagcgattgaccggccgcatggtgcgggccctcggcatgcgataa
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