Neobacillus thermocopriae: BTDUT50_06540
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Entry
BTDUT50_06540 CDS
T06692
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ntm
Neobacillus thermocopriae
Pathway
ntm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ntm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTDUT50_06540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ntm03019
]
BTDUT50_06540
Messenger RNA biogenesis [BR:
ntm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTDUT50_06540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
QAV26323
LinkDB
All DBs
Position
complement(1238099..1239766)
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AA seq
555 aa
AA seq
DB search
MNMLKNKQVGVFALGGLGEIGKNTYGVQYEDEIIIIDAGIKFPEDELLGIDYVIPDYSYL
VKNAENIKGLFITHGHEDHIGGIPYLLRQVNVPIYGGKLALGLIRNKLEEHGLLRQTKLI
EIKEDDVISFGKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVQGRIIFATFASNIHRLQQ
VTEAAVLNNRKIAVFGRSMEAAIEIGQQLGYIKCPKDTFVDATQINRLPAHRVTILCTGS
QGEPMAALSRIANGSHRQIQIMPGDTVVFSSSPIPGNTVSVNRIINMLARAGAEVIHGPL
SDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHVKLAVDCGVPEENCFIMDNGE
VLGISEEGASIVGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEMKI
AAGPDIISRGFVYMRESGNLISDAQQLIAKHLQQLLEQGTNQWSDIKTEITDTLAPFLYE
KTKRKPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgttgaaaaataaacaagttggcgttttcgccctcggcggtctaggcgaaatc
ggaaaaaatacatatggcgtgcagtatgaagatgaaatcatcatcatcgacgccggcatt
aagtttccggaagatgaattgctcggcattgattacgtcattcctgattatagctattta
gtgaaaaacgcagaaaacattaaaggattgtttattacgcacggacatgaagaccatatt
ggcggcattccgtatttacttcgtcaagtgaacgtgccaatttacggtggaaaattagcg
cttgggctcattcgcaacaaattagaagaacacggattgcttcgccaaacgaaactaatt
gaaataaaagaagatgacgtcatttcgttcggaaaaactgcggtaacatttttccggaca
acgcacagcattccagatagctacggcattgtcgtcaaaacaccggtcgggcaaattgtg
catacgggcgattttaaattcgactttacgcctgttggcgagccagccaacttaacgaag
atggctgaaatcggaaaagaaggcgtcctttgtttgttgtccgacagtacaaatagcgaa
attccgcattttacgatgtctgagcgacgcgtcggcgaaagcattcacgatattttccga
aaagtacaaggacgcattatttttgcgacgtttgcttccaacattcaccgcttacagcaa
gtcaccgaagcggctgtattaaacaatcggaaaattgcggtgttcggacgaagcatggaa
gcggccatcgaaattggacaacagctcggctacattaaatgtccgaaagatacgttcgtt
gacgctacgcaaattaatcgccttcctgcccatcgcgtgaccattctttgcaccggaagc
caaggtgagccgatggcggcgttatcgcgcatcgccaatgggtcgcaccgtcaaattcaa
attatgccgggggatacagtcgtcttttcatcttcgccaattccgggcaatactgtaagt
gtcaatcgcatcattaacatgcttgcgcgtgcaggagcggaagtcattcatggaccgctt
agcgacattcatacgtctggtcacggcggacaagaggaacaaaaattaatgattcgcctc
atgaaaccgaaatatttcatgccgattcacggtgaatatcgcatgcaaaaaatgcatgta
aaactagctgtcgattgcggtgtaccagaagaaaactgctttattatggacaacggagaa
gtgctcggcattagcgaagaaggcgcaagcatcgtcggcaaaatcccatctggctccgtc
tatatcgacggaagcggcattggcgatatcggcaacatcgtcttgcgcgaccgtcgcatt
ttgtcggaagaaggattagtcatcgtcgttgtgagcatcaacatgaaagaaatgaaaatt
gccgcaggtccagacatcatttcacgcggattcgtttatatgcgtgagtcgggcaattta
attagcgacgctcaacagctcattgctaaacatttacaacaattgcttgaacaaggtaca
aatcaatggtctgacattaaaacggaaattaccgatacgctcgcaccgtttttatacgaa
aaaacgaagcgaaaaccgatgattttaccgattattatggaaatataa
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