Nicotiana tomentosiformis: 104085217
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Entry
104085217 CDS
T05025
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03013
Nucleocytoplasmic transport
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104085217
03015 mRNA surveillance pathway
104085217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104085217
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104085217
mRNA cycle factors
P-body specific factors
104085217
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
104085217
NCBI-ProteinID:
XP_009587502
LinkDB
All DBs
Position
Unknown
AA seq
517 aa
AA seq
DB search
MKGPLDRTKVVLRHLPPTISQSMLVEQVLSRFTGRYNWFSFRPGKSRPSPQIFSCSQKHQ
TYSRAYVDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRAPKRWSKKDGREGT
ILKDPEYLEFLEFIAKPIENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKS
GARKSLSNGRPTRRANGTSSGSPSSSAFKQGSEKRRVSTTMYVLRDSSKAGSGKDKRHIL
VPKRDDQQQAEKSGTSAPGSGADAVEEETGGAADVGKKKILLLKGKEREIPNVSSGSLIQ
DNAAPIVKNTITSSAPQQNQRREASGKIIRSILLKDARQNQAPSASQQEQHSQDKDKKPP
RPPSVQLFQKEINGVNEDKIVGTDLHVVHTEKQERRSRIRDRPDRGVWTPLRRADSLHAS
DESLSSSTSQSSEVLDSLEGSQGETKNDLPNVRGGEFRPMGSGRNSHSSFDNGTYKRRGM
RDDGISVGEGKPLRRGGPSNYGTHEKQVWVQKSSSGT
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaccgttagatcgaacaaaagtagtgctgcggcacttgccccctacaatttct
cagtctatgcttgttgagcaagttctttcccgattcactggtcgctacaactggttctct
tttcgtcctggcaagtccaggccttcacctcaaattttctcctgcagccagaagcatcaa
acctattcaagagcctatgttgactttaagaggccagaagatgttatcgagtttgccgag
ttctttgatggacacgtttttgtaaatgagaaaggcactcagttcaaaactattgttgag
tatgctccttcacagcgtgctccaaaacgctggtccaagaaggatggccgcgaaggaacc
atcttgaaagatcctgaatatctggagttccttgaatttattgcaaagcctatcgagaat
cttccgagtgcagaaatacaattggaaagaaaggaagctgaacgagctggttctgcaaag
gatgctcctatagttactcctttgatggactacatacgtcagaaaagagctgccaagagt
ggagctcggaaatctctatctaatgggagaccgaccagaagagcgaacggcacatcctca
ggaagtcctagctcaagtgcatttaaacaaggctctgaaaagagaagggtttctacaacc
atgtatgttcttcgagatagttctaaggctgggagtggcaaagacaaaagacatatttta
gttccaaaacgtgacgatcagcagcaggctgagaagtctggtacctccgctcctggatct
ggggctgatgcagttgaagaggaaactggtggagctgctgatgttgggaagaagaaaatc
ctgctcttgaagggaaaggaaagagaaattcctaatgtttctagtggttcattgattcag
gacaatgcggcacctattgtcaagaatacaataacatcatctgctccgcaacagaaccag
cgccgtgaggcaagtgggaagatcattagaagtattcttctcaaggatgctcgtcaaaat
caagctccttctgcatcccaacaagaacagcacagccaggataaggacaaaaagcctcct
aggccaccaagcgtgcagttgtttcagaaagaaattaacggagttaatgaggataagatt
gttggaactgatttgcatgttgtccacactgaaaagcaggaaagacgctctaggattagg
gataggcctgatcgtggtgtttggactcctcttcgtcgtgctgatagtttgcatgctagt
gatgaatccttgtcttcatctacctctcaatcttctgaagtgctggattctcttgaagga
agtcagggtgaaaccaaaaatgatctgccaaatgttcgtggtggggagttcagacccatg
ggaagcgggcgtaattctcattcttcttttgacaatggtacttataaacgtcgtggtatg
agggatgatggcatttcagtaggggaaggaaaacccttgagaaggggaggtccttctaac
tatggtacccatgagaaacaagtgtgggtccaaaagtcaagttctggtacttaa
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