Nicotiana tomentosiformis: 104092879
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Entry
104092879 CDS
T05025
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03022
Basal transcription factors
nto03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104092879
09124 Replication and repair
03420 Nucleotide excision repair
104092879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104092879
03400 DNA repair and recombination proteins [BR:
nto03400
]
104092879
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104092879
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104092879
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
104092879
NCBI-ProteinID:
XP_009596858
LinkDB
All DBs
Position
Unknown
AA seq
452 aa
AA seq
DB search
MPQVKIVARNFMDMVASLLAVKLDMLYDNSFICEVILRSLPPLAKKYVLQLLYIDIPISA
KSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFDRKKEAMYRLNPKFQFNLQKHIVHGGVL
PREPMPSNITVRLPSLEELEAFAVEQWECFLLHLISSSEAGKTTNISSSMMKIFQRGLLS
QRDDREPPRLTECGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTG
KAYNTNTLTDLQRSITKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTSRKQGFI
VIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAITKESLYKAFQNGITAEQIISF
LQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMIPAHLYDEFPSKDVFEAACDFARE
YGGLLWEDSKQLRIIVKADILTEMKEFLRRQK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagtgaagatagtagccaggaatttcatggacatggtggcttcactgcttgca
gtgaagctcgacatgctctacgacaattcctttatctgtgaagtcatcctcagatcgtta
cctcccttagcaaagaagtatgtgctacaattgttgtatatagacataccgatctcggcc
aagtcaatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgat
agattgatacagctgagagtaatgacggaaacatttgacaggaagaaggaagccatgtat
cgattaaatccaaaatttcaatttaatcttcagaagcatatagtccatggtggagtctta
ccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagag
gcatttgctgttgaacaatgggagtgctttctgctgcaccttataagctccagtgaagct
ggaaagaccacaaacataagctcttcaatgatgaaaattttccagcgtggccttttaagt
cagagagatgacagggaacctccaaggttgactgaatgtgggttccagttcctgctgatg
gacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcga
ggtgtggattcagcagatcttattgcatttctgttggagctaagctttcatgttactggc
aaggcatacaatacaaacacattaactgatctccagcgaagtataactaaggacctttca
gatttgggactggtcaagctgcagcagggaaggaaagagagttggtttattcccaccaaa
cttgccaccaatctgtcaattagcttagcagatacaacgtccaggaaacagggatttatc
gttattgaaacaaacttcaggttgtatgcatattcaacatcaaaattacactgtgagatc
ctacgcctctttgcaagggtggagtaccagcttccaaatctcattgtcggtgctattaca
aaagaaagtttgtataaagcttttcaaaatggcattactgctgagcagataatttctttc
cttcagcagaatgctcatcctagggttgcagagaggataccatctgtgccagagaatgtt
actgatcagattagattgtgggaatcagatctgaatcgggttgagatgattcccgcccac
ctctacgatgaattcccttctaaagatgtctttgaggctgcatgtgattttgccagggaa
tatggaggattactgtgggaggactctaagcaactgcgcatcatagtgaaggctgatatt
ttgacagagatgaaggaattccttcgtcgtcaaaagtaa
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integrated database retrieval system
