Nicotiana tomentosiformis: 104112737
Help
Entry
104112737 CDS
T05025
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104112737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nto03021
]
104112737
03019 Messenger RNA biogenesis [BR:
nto03019
]
104112737
Transcription machinery [BR:
nto03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104112737
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104112737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
104112737
NCBI-ProteinID:
XP_009621044
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MEMEGSRRPFDRSRLEPGPKKPRLMEAGTERSSSNGSSFISQRAAASNSRSSDSIRGPYQ
QQQQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLQSAKAIAATICNNIIEVPTEQK
LPSLYLLDSIVKNIGRDYIKYFAGKLPEVFCKAYRQVEPSVHPGMRHLFGTWKGVFPPQQ
LQLIEKELGFTTGVNGSSSGTSRPDPQAQRPAHSIHVNPKYLEARQRLQQSTRTKGAVSD
ISSTLNVNENVERPEITTSVSSGRSWIDPSIKRAQKEKLNEHVPEKTISAAYGDSDYGSD
VSRRSAFGAGRGGERIKEQGFDKPWYDSGTGKILSQRSGLDIKHGFQSISQKSATSDAHP
QLIQSLPNRTSTLTDRSWKNSEEEEYMWDDVNSAAKDRWASEDSDKSDLENQLRRPQSIR
EVGLRADSEASADSLSGDERGQTSFGNQMSAMWSRDSHALDGARHSASLRSAPVHPEGYQ
TSFSSLSKAANSIGRTSFKSQTGSVHVGAPNFVPMNATLESRGSIVQQQRETLRAASPSA
HSPMHQHPPSPSVITSNANQIANSLDEQYQPQATSRSDPRISQFSRRSNLDPRNQFSHES
LAMPSWNAVSVNSQRQQPPNLQNASTLASSLQLRHDVQQESLESEYSGQTQNSAVPQISD
FPNPSSTSSLLAAVLKSGIIGSKSSSGTTPSSLDKGALSSQASAQPPLPSGLPPAQFSPP
GPRIPPASISSLSLDKNASNTPNYNSQRNVEPPPLPPGPPPTLVEGASLQPLNAPKSASS
PLSSILSTLVAKGLISASKESPTYTPSDTPPQTQNHIPPASSRSIPALSAPISSSIPFLA
PEAEITLSKPAAKTPDALLRSTKEQAKSLIGLAFKPDVIRKSHPDVISELLDDVPHQCGI
CGFGLKLQEKLDRHLEWHALRNPDVKLLNSSRKWYLNSGEWIAGFGGLPCDKSKGTIGGS
NETSECTEAVVPADESQCVCVLCGELFEDFYNEESDKWMFEGAVYMSIPGESGTQGPIVH
TNCISESSCQELGLA
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagggttctcgtagaccatttgatagatcaagattagagccaggacctaag
aaaccaagattaatggaagctggaaccgagcggagcagctcaaatgggtcgagcttcatt
tctcaacgggctgctgcttcgaattcgaggagtagtgattcgattcgcgggccttatcaa
cagcagcaacagcatcaggagctagtgagccagtataagactgccttagctgaactgaca
tttaattcgaagcccataattacaaatttgactattattgctggtgagaatttgcagtct
gctaaggcgatcgctgctactatctgcaacaacattattgaggttcctactgagcaaaag
cttccatctctataccttttggacagtattgtgaagaacatcgggcgggattatattaag
tattttgccggcaagctacctgaggttttctgcaaagcttatagacaggttgaaccttcg
gtacatcctgggatgcggcatctttttggaacttggaaaggagtattcccccctcaacaa
ctccaattaattgagaaggagctcggatttacaactggtgtcaatggctcttcatcaggg
acatctaggcctgatccccaggctcaacgacctgcacatagcattcacgtaaatcccaaa
tatctggaggcaaggcaacgcctacagcaatcaaccaggacaaaaggagcagttagtgac
atcagcagcactcttaatgtaaacgagaacgtagagagaccggagataacaaccagtgtt
agttctggaagatcatggattgatccttctattaagcgtgctcagaaagaaaagttgaac
gagcatgttcctgagaaaactatcagtgcagcatatggagattcggattatggttctgat
gtgtcgaggcgttctgcctttggagcaggaagaggaggtgagagaattaaggaacagggg
ttcgataaaccttggtatgattctgggacgggtaaaatattgagccaaagaagcggcttg
gacattaagcatgggttccaaagtatatcccaaaaatctgcaacctctgatgcacatcca
caactgatacagtccttgccaaatagaaccagtactttgactgataggagctggaagaat
tctgaggaagaggagtacatgtgggatgatgtaaacagtgcagctaaagaccggtgggca
tctgaggattcagataaatctgacctagaaaatcaactgaggagaccacagagcataagg
gaggtcggattaagggctgatagtgaagcctcagctgattctctttcaggtgacgagcga
ggccaaacatctttcgggaatcaaatgtcagcaatgtggtcaagggattcacatgcttta
gatggagctaggcattcagcttctcttcgaagtgctccagttcatccagaaggctatcaa
acttctttcagttcgttgtcaaaagctgcaaattcaataggtaggacatctttcaagtca
cagacaggttcagtccacgttggagcgccaaactttgtgccgatgaatgcaactttggag
tccaggggatccatagtgcaacagcagcgagaaactctcagagctgcctctccctctgct
cactcaccaatgcatcagcatcctccatccccatcagtcataacaagcaacgctaatcaa
atagctaacagtctcgatgagcagtaccagccgcaggccacttctcgttctgatccaaga
atatcccaattctcaaggaggtcaaatcttgatcctcgtaaccagttttcccatgaatct
ctggcaatgccatcttggaatgccgtttcagttaattcacaaagacaacagcctccgaat
ttgcaaaatgcttctaccttggcctcctctcttcagttgaggcatgatgttcagcaggaa
agcctggaatctgaatattctggtcaaacccagaattcagcagttcctcagatttcagat
tttcctaatccctctagcactagcagtttgttggctgctgttttgaagagtggaattatt
ggtagtaaatcaagttcaggtacgacaccgagttctcttgataagggtgctctgtcatcc
caagccagtgcacagcctcctttaccaagtggtcttcctcctgcccagttttccccacct
gggcccaggattccaccggcttctatctctagtctatcgttggacaaaaatgcttcaaac
actccaaattataactcccagagaaatgtagaaccaccaccattgccacctgggccacct
ccaactcttgtagagggtgcatcactgcagcctttgaatgcaccaaaatctgcttctagt
cccctgtcaagcattttgagtacattggtagcgaaagggttgatatccgcatcaaaggag
tcccctacttacactccttcggatacacctcctcaaacgcagaaccatattccaccagca
agctccaggtcaattcctgctttatctgctccaatatcctcatccattcctttcttggct
ccggaggccgagattactctctcaaaacctgctgctaaaacccctgatgccttacttcgg
tccaccaaagaacaggcaaaaagtctcattgggcttgcgtttaagccagatgtgattcgg
aagtcccatcctgatgtgatcagtgaacttcttgatgacgttccacatcagtgtggcata
tgcggttttggacttaaactccaagagaaacttgatagacacttggagtggcacgcattg
agaaatccagatgtcaaactgttgaatagttcaagaaagtggtatttaaattctggagaa
tggattgctggatttggtggcctcccttgtgataaatccaaagggacaattggaggttct
aatgaaacatcagaatgtaccgaggctgtggttcctgcagatgaaagtcaatgtgtatgc
gttttgtgtggtgagctttttgaagacttctacaatgaagaaagtgacaaatggatgttc
gaaggtgctgtttacatgagtattccaggtgaaagtggtactcagggtccgatagtccac
acgaactgtatttcagaaagttcttgtcaagagttgggacttgcctag
DBGET
integrated database retrieval system
