Neodiprion virginianus: 124297278
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Entry
124297278 CDS
T09046
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
nvg
Neodiprion virginianus
Pathway
nvg03013
Nucleocytoplasmic transport
nvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124297278
09122 Translation
03013 Nucleocytoplasmic transport
124297278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvg03019
]
124297278
03041 Spliceosome [BR:
nvg03041
]
124297278
Messenger RNA biogenesis [BR:
nvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124297278
Spliceosome [BR:
nvg03041
]
Complex C
Other components
EJC/TREX
124297278
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124297278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HPS6_C
RraB
Carbpep_Y_N
Motif
Other DBs
NCBI-GeneID:
124297278
NCBI-ProteinID:
XP_046604090
EnsemblRapid:
ENSNVRG00000004433
LinkDB
All DBs
Position
2:26171165..26187631
Genome browser
AA seq
651 aa
AA seq
DB search
MASFETLRHDYNNHLEKCFKLSDLSGFQKKCLEMNTNVSNRKSIVDQALRDTLLTVLLDD
SVGNVQHLESYITFCIELCRKDLTTASMPVILLGDIFDCMTLDRCEKLFTFVENNVVVWK
EEIFFSACKNNLLRMCNDLLRRLSRSQQTVFCGRILLFLAKFFPFSERSGLNIVSEFNLD
NHTEFGNEKSEKEVLEQIVEDGDNTENKIPIDYNLYRKFWALQDFFRNPNQCYNKMHWKV
FSAHTSHVLSAFTSFKLEEQRSLPTKCTKMDTSSEENYKETHYFAKYLTNQKLLELQLSD
SNFRRYVLLQFLILFQYLNSAVKFKAETHELKPDQVEWVKTTTDQVYLLLSETPPNGSDF
AETVKNILKREEHWNAWKNHGCPPFKRPALESNSEGEEPRKQKRRIGDVIRAAEDEKKYH
LGNPELTKLWNLCPNNLEACKSMDRDFLPSLETYFAEAIEQLDPAAMVDDEYKKVNDGNF
GWRALRLLARRSPHFFVHGNNPINKLPEYLEAMIKKIAKDRPQTQSDIKTESEEIPTDGN
EAEFNEDVLKQETEQVEVDASTTKFSKFNKVTADIVAKLSDILKGNWKDLAAKFGYHANE
IAFFQKKRTQYEQCKSMLEIWAEEDEDASIENLAYILEGLGFTEAVAVLKS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcttctttcgagacactgaggcatgattacaacaaccacctggaaaaatgcttcaag
ttgtcagatttatccggattccaaaaaaagtgtctggaaatgaacacaaatgtctcgaat
agaaagtcaatagtcgatcaagcgctgcgagatacgctgcttactgtactgctggatgat
tctgtgggaaacgtacagcatcttgaatcttacataacgttttgtatcgaattatgtagg
aaagatttaacaacggctagcatgccagtcatattactcggtgacatatttgattgcatg
acattggaccgatgtgaaaagttattcacgtttgttgagaacaatgttgttgtgtggaaa
gaagagatatttttcagtgcctgtaaaaacaatttactcaggatgtgcaacgatctgctc
agaagactttctcgctctcaacaaactgtattttgtggaaggattcttctattccttgcc
aaatttttcccattctctgagaggtcagggttgaacatagttagtgaatttaatctcgac
aatcacacagaatttggcaatgagaaatcagagaaagaagtgcttgagcagatcgtagaa
gatggcgacaatactgagaacaaaattccaatagattacaatctgtaccgaaaattctgg
gcgctgcaagactttttcagaaatccaaatcagtgctataataaaatgcattggaaggtt
ttctctgctcatacgtcgcacgtcttgtcagcgttcacgtctttcaaattagaagagcag
cgtagccttccaacaaaatgtacaaagatggacacttcgtcggaggaaaactacaaggaa
actcactacttcgcaaagtatctcactaatcagaagctgttagagttgcagttgtcagat
tcgaactttaggagatacgtactacttcagttcctgatactctttcagtacctcaacagc
gccgtaaagttcaaagccgaaacacacgagctgaaacctgatcaagtcgaatgggtcaag
acaacaacagaccaagtgtatttattactctctgaaacacctcccaatggatctgatttt
gcggaaactgtaaaaaacattttaaaacgagaagaacactggaatgcctggaagaatcat
ggatgtccaccgtttaagaggcctgctcttgaatccaactctgagggagaagaaccaaga
aaacaaaaaagacggatcggtgacgtaatccgagctgccgaagatgaaaaaaagtatcat
ttaggaaatcctgagttgacaaagctatggaatttgtgccccaacaatttggaggcttgt
aaatcaatggacagagacttcctgccttccctagaaacttatttcgccgaagctatagag
caattggatccagctgcgatggtcgatgatgaatacaagaaagtaaatgatggtaacttt
ggttggagagcactgcgattactcgctaggcggagtcctcatttttttgtacacgggaat
aaccccatcaacaaattaccagagtatttggaagctatgataaagaaaatcgccaaagat
cgaccgcaaacgcagtcggacataaaaacagaatccgaagaaattcccaccgacggaaac
gaggccgaattcaacgaggacgtacttaaacaagagaccgaacaagttgaggttgatgca
tcaacaacaaagttcagtaaattcaacaaagtgacggccgatattgttgcgaaactgtca
gatatattaaaagggaactggaaagatctagcagcgaaattcgggtaccatgccaacgaa
atcgcattctttcagaagaaacgaacacagtacgaacagtgtaaaagtatgttagaaatc
tgggccgaagaggacgaggatgcatcgatcgaaaatttggcttacatcctcgagggattg
ggctttacagaggcagttgctgtattgaagagctaa
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