Neodiprion virginianus: 124304146
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Entry
124304146 CDS
T09046
Name
(RefSeq) endoribonuclease Dcr-1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
nvg
Neodiprion virginianus
Brite
KEGG Orthology (KO) [BR:
nvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nvg03036
]
124304146
Chromosome and associated proteins [BR:
nvg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124304146
microRNA pathway
RISC loading complex
124304146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
ResIII
Motif
Other DBs
NCBI-GeneID:
124304146
NCBI-ProteinID:
XP_046618179
EnsemblRapid:
ENSNVRG00000016553
LinkDB
All DBs
Position
4:complement(26737088..26748482)
Genome browser
AA seq
1932 aa
AA seq
DB search
MAFPLNDQVHTKSFSPREYQVELLYAALESNIIVCLGKNSEQIFIVIKLIQELATNNRRS
PSEGGKRSVYILRDTDRCLTKAVYIQQLTDLRVLICDSETWPEFDRKFAESQVIVTTSHV
CADLLNQNKIYPSQINLAIVDQCHKAVNDEKLKFVLQKFNVSNGPRLIGFAAPVFNLTRQ
PGRLEAEVELLEKTFHCRIETASDIVSVLRYSPKPKEYIVEYKCGEYEELNQTLENCAMH
AMNFLCDHRYDPTEIYNDEFLEDIQKIPDPKQEPCSMIEDFLYVLQTFGAWCANHAALAL
LIQAEKLKVKTPYERHYLLFNVVVSLFIKIRAICESEFENLSEREKLYKFSTPCVHRLLH
ILKCYAPSSKKELTIPDNKLSNGHSVSACKKDIDTGKDGLQQSKYIGNVKKLRTGIKRPP
KSRYPRTQIDPDLLCGVIFVDKGFTAKILFYLLNDACKYDKDLQFLSPLYTIEKNPEGTS
SAHDMEVQHRKQEEVLKSFRIHECNLLIATSILEEGIDIPKCNFVMRYDFPKSYQSYVQC
KGRARATDALHVLFVSEKISNECIQKLAEYHYIEQTLLSKCANKEPSEEEELLADKYADL
LPQYKPLSIEGSPSVTFNSAISLVNRYCAKLPSDTFTRLTPEWIIEPTIIDNKTMYVCSI
RLPINSPVKYTVTSYPMPNSAMARRLAALQLCIDLHRANEIDDYLLPIGKENFKANPEDA
EAPPLPDETKAEFSEARPGTTKRRQYYYKKTAEVLTDCRPVLMTKSFLYHISMVLTCPLP
EEQNTRGRRIYPPEESAIGFGILTLKKIPKLCPFPIYTRSGEVHVKLELSKETVTLNADQ
IERVAAFLKYTFTNVLRLQKYLMLFDPNASENSYFIVPVKTVITENGPDVNVDWEFLERI
YENRNAIPNELSEGDRNQFKFDATKYHDAVIMPWYRNKDQPQYFYVAEICANLNPKSSFP
GADYSTFEEYYLKKYNIQIQNLNQPLLDVDHTSARLNFLTPRYINRKGVALPTSSEETKK
AKRENLEQKQILVAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAKMINLG
QQHLDPDFEWLPLDFGWSLSEVLNKSKDSSKLIEMKSDAKTTKSVIPKLTDSMSVAEEIE
KDISSKHDSSVDKDNEMEIGTWSNEMAINAVELNNENIFSPNLTVLQDTFSWNDIRYGSS
ACDSDLDAYDTDDTSSEAMGDFSDESDEGGGGLRIAFMGDNVAEAVEDENRIRKNEINKR
ILDLLELERSYDEDVWQCSNDIQNGLIQQHETAQNIETSRTKEEILTNGMFIHSDQEIVL
KRRSSAVHNKTDLLPSEYYEYISQVSKRFTHEVINTQPLRQPIKKQSNNSQILEEADDSL
FSFDYQPNLNGHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYSITTYLYCTYDN
IHEGKLSHLRSKQVSNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPREIEQALIE
SGVPSNLWNQADIPVLRAVNRNEISELVRETEHKLEIMRTELIRSSNDSATDFEKLRCFI
PYNLITQHSIPDKSVADCVEALIGAYLIACGPRGAFLFMAWLGIHVLPFQKVSIISTNEP
LDRPPGSSSYIKEINENGETCWTQIRYGNLDEPQCPLLRHVPDPEKELSLMLDGYSDLEE
SMGYKFREPSYLLQAFTHASYQPNKLTDCYQRLEFLGDAVLDYLITRHLYEDTRQHSPGA
LTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLNVVIDRFVRIQEENGHSISEEYYLIA
EDECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWRVYYKIMRSEIEQFSTNVPKS
PIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKN
LKKMQRHQREKL
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggcatttccattaaatgatcaagttcatactaagtctttctctcctagagaatatcaa
gtggagctcctctacgcagctttagagagcaacataatagtttgtctaggaaaaaattct
gaacaaatatttattgttatcaaactaattcaagagttggcgactaacaacagaagatct
ccgtcagaaggaggcaagcgctcagtatacattctaagagatacagatcgatgtttaacc
aaagctgtatatatacaacaattgacagatttacgcgtacttatctgtgattctgagaca
tggccagagttcgatagaaaattcgctgaaagtcaggtgattgttactacatcacatgtt
tgtgcagatctgttgaatcagaataaaatttatccaagtcaaataaatttggcaattgta
gatcaatgccacaaagcagtcaatgatgaaaagctaaagtttgttttacaaaaatttaat
gtctctaacggtcctcgactaattggttttgctgcaccagtttttaatctaactcgtcag
ccaggacgactggaagcagaagttgaacttttggaaaaaacttttcattgtagaattgaa
acagccagtgatattgtatcagtattaagatatagtccaaaaccaaaagagtacattgta
gaatacaaatgtggcgaatatgaagaattaaaccagactctggagaactgtgctatgcat
gctatgaactttttgtgtgatcatcgctatgatcccactgaaatttacaacgatgagttc
ctcgaggacatacagaagattccggatcctaaacaggaaccttgctcaatgatagaagac
tttttgtacgtacttcaaacattcggggcttggtgcgccaatcacgctgctctagctttg
ctaattcaagcagaaaagctgaaagtaaaaaccccttatgagcgacactacttattattc
aacgttgtggtttccttgtttattaaaataagagctatttgtgaaagtgaatttgaaaat
ttgagcgaaagagaaaaattatacaaattctccactccatgtgttcatcgactattgcat
atactcaagtgttatgccccatccagcaaaaaagaattgactatcccagacaacaaactg
agcaatggacacagtgtatctgcctgcaagaaagacattgatactggaaaagatggcctc
caacaatcaaaatacattggaaatgtcaaaaagctacgaactggtattaaaagacctcca
aaatcacggtatccacgtactcaaattgatccagatctgttgtgcggagttatttttgtg
gataaaggatttacagcaaaaatattattttatctattgaatgacgcttgtaagtatgac
aaagatttacaatttctctctccactttatacaattgaaaagaatcctgagggaacaagc
tctgctcatgacatggaggttcaacatcggaaacaagaggaggttttaaaaagcttccga
atacacgaatgtaatttattaattgctacatcgatattggaggagggaatagatatacca
aaatgcaattttgtgatgaggtatgatttccctaagagctatcagtcttacgtgcagtgc
aaaggccgagctcgggcaactgatgcccttcatgtgcttttcgtgagtgaaaaaatatcc
aatgagtgtatacaaaagctagctgaatatcactatattgaacagactttattatcaaag
tgcgccaataaggaaccttcggaagaagaagaattattggcggataaatatgctgatttg
ttacctcagtacaaaccattgagtattgagggttcacctagtgttacttttaattctgca
atatctttggtaaacaggtattgtgccaagctgcctagtgatacattcactcgattaaca
ccagaatggataattgaaccaacaattattgacaataaaaccatgtatgtttgttccata
cgtttgccaataaactcgcctgtgaaatacacagtaacgtcatatccaatgccgaatagc
gcaatggctcgtcgcttggctgcacttcaactctgcatagatcttcatagagctaatgaa
attgatgattatttgttgccaattggtaaagaaaattttaaagcaaacccagaagatgct
gaagcccctccactaccagatgaaacaaaagctgagttttctgaagcgcgcccaggtacc
actaaacgaagacaatactactacaaaaagactgccgaagtgttaacagattgcaggcct
gtactgatgacgaaatcgtttttatatcatattagtatggtgctcacttgccctttacct
gaggaacaaaacacaagaggtcgtcgaatatatcctcctgaagagtcagctataggattt
ggcattctaactctaaaaaaaataccaaagctatgtccattcccaatatacacgagatcg
ggagaggttcatgtaaaacttgaattaagtaaggagacggttacattgaatgctgatcaa
attgaacgagtagcagccttcctcaagtacacgttcacaaatgttctaaggcttcaaaaa
tatctgatgctatttgatccgaatgcttcagaaaattcatacttcattgttcctgtaaaa
acggttatcacagaaaatggcccggatgttaatgtggattgggagttcttagaacgtata
tatgagaacaggaatgcaataccgaatgaactgtcggaaggagatcgcaatcaattcaaa
tttgatgcaactaaatatcatgatgctgttattatgccatggtatagaaataaggatcag
ccacaatacttttatgtagcggaaatttgtgccaacttgaacccaaaatcttcttttcct
ggggctgactatagtacatttgaggagtattatttgaaaaaatataacatacagattcag
aatctgaatcaaccgctacttgatgtagatcatacttcagctaggctcaattttcttaca
ccaagatacatcaatcgtaaaggtgttgcattaccaactagtagtgaggaaaccaagaag
gcaaagagagaaaatttggaacaaaaacaaatattggtagcagagctttgtgctattcac
ccatttcctgcctcattatggagacaagcggtttgtctgccatgcatactttatagaatc
aacgcacttcttcttgctaatcaaatacgatgccaggtagcaaaaatgataaatttgggg
cagcaacatttagatccagactttgaatggttgccattagactttggttggagtctatcg
gaagtcttgaataaatcaaaggacagtagtaaattgattgaaatgaaaagtgatgctaaa
actacgaaatccgttatacctaaattgacagacagtatgtccgtggcagaagaaattgag
aaagatatctcttcaaaacatgacagttccgtggataaagataatgaaatggaaattgga
acgtggtctaatgaaatggctataaatgcagtggaattgaataatgaaaatattttttca
ccaaatttaacggtgctacaagataccttttcttggaatgatattaggtacggctcatct
gcctgtgattctgatttagatgcttacgatactgatgacacctctagtgaagcaatggga
gatttttcagacgaaagtgatgaaggtggtggtggtctacgcattgcttttatgggagat
aatgttgcagaagctgtggaagacgaaaatagaatccgtaaaaatgaaattaataaaaga
attttggatttattagagttggaaagaagttatgacgaggatgtttggcagtgttccaat
gatattcagaatggattaattcaacaacatgagacagctcaaaatattgaaactagtcga
accaaagaagaaattctgacgaatggaatgtttattcatagcgatcaagaaatcgttttg
aagaggcgctcatcagctgtacataataaaactgacttactgccgtctgagtattatgaa
tacatctctcaggtttcgaaaagatttacacatgaagttattaatacgcagcctctgagg
caacccattaagaaacaatcaaacaactctcagatattggaagaagcagacgattctctt
tttagttttgattatcaaccgaatctaaatggtcaccctggaccaagtccgagtttaatt
cttcaagcgttgacaatgtcaaatgctaacgatggtattaatttagagaggctcgaaact
attggagattcttttctaaaatattcaataactacatacttgtattgtacatatgacaat
atacatgaaggaaaattgagtcacctgagatcaaaacaagtgagcaatttaaatttatac
agattaggccgtcgaaaagtattgggtgaaagtatgatagcaactaaatttgaaccgcat
gataattggttaccaccatgctattatgtaccacgtgaaatagaacaagcattaatagaa
tctggagtgccgtcaaatttgtggaaccaagcagatattccagttctcagagctgtaaat
cgaaatgaaatatccgaacttgttcgagaaacggagcataaactcgagattatgcgaact
gaactgattcgaagcagcaatgattctgctaccgattttgaaaagttacgatgtttcata
ccatataatctaattacacagcatagtataccagataaaagtgtcgctgactgtgtggaa
gctttaataggagcatatttaatagcgtgtgggcccagaggagctttcttattcatggcc
tggctaggaattcatgtcttaccattccaaaaagtttctatcatatccacaaatgaacca
cttgacagacctccgggtagttcgtcctatattaaggaaattaacgaaaatggagaaaca
tgctggacacaaatacgctatggaaacttagatgagccacagtgcccacttttgaggcat
gtaccagatcctgaaaaggagttgagtctgatgctggatggttatagcgatcttgaagaa
agtatgggctacaaatttcgtgagccgagttacttattgcaagcattcacccatgcatcg
tatcagccaaataaattgacagactgttaccaacgcttagaatttcttggagatgcagtt
ttagattatctgataacaagacatttgtatgaggatacaaggcaacattcccctggtgct
ctaacagatttgaggtcagctttggtaaataatacaatatttgcttcgctggcagtgaga
tgtggatttcataaatatttccgccatctatcaccaggtttaaatgtggtcattgacaga
ttcgtcaggatacaagaagaaaatggtcactctatcagtgaagaatattatttaattgct
gaagatgaatgcgaagaggcagaagacgttgaagttccaaaggctttaggtgatgttttt
gaatctttggcaggagcaatttatttagacagtggtatgtctcttgacgctgtttggagg
gtgtattataaaatcatgaggtctgaaatagaacaattcagtacaaacgtaccaaaatct
ccaataagagaattattagagttggaacctgaaacagcaaagtttgggaagcctgaaaaa
ctagctgatggtcggcgtgtaagagtcacagtagatgtgtttgggaagggttctttcaaa
ggaataggaagaaattatcgcattgctaaatgtacagctgcaaaatgtgcacttaaaaat
ctaaaaaaaatgcaacgacatcaaagagaaaaactgtga
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