Nicrophorus vespilloides (burying beetle): 108556284
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Entry
108556284 CDS
T04922
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nvl
Nicrophorus vespilloides (burying beetle)
Pathway
nvl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nvl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108556284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nvl03400
]
108556284
Enzymes [BR:
nvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108556284
DNA repair and recombination proteins [BR:
nvl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108556284
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
108556284
NCBI-ProteinID:
XP_017767797
LinkDB
All DBs
Position
Unknown
AA seq
884 aa
AA seq
DB search
MSKGCIAVAPIGDNIATLNSFNDFCRACEGIKNSPDIVGKTTILHEYMQSVKSKAKLCNR
DVDKSLFPIIRLLLPQYERHRNPYQLQESTFIKVLINKLSLTAEEATLLKKYKDIHTARK
AGDFADVASEMLSKRFFDKGSMSIYELNSYLDNISFYSTNKSIQEDTILSVISATTPLEQ
KWFIRIIFKDLKLGLGYNKILTSLHWTAPKLFNRLSSLEKICTILSAENPIEGDIAVQLF
SCVRPMLSKRCCKDIFSKLFGREHVYFMETKYDGERFQIHYNHNVVKLFSRNGFDFTSKF
QELVDVLPSLIKSNARNFIIDGEMMLWNKAEKKFASKGYRVDVKNLKPEDEYQACFVSFD
LIFWNGYPAIDKPLFERKIFLENMIENKEGVYLYCDYSVAKKKAHVINFMNEAMNNAQEG
IVMKRHDSKYLPNERTGWYKLKPDYFDGLVTDLDLVVMGGNYSDLRSEAYCSMQVVHFVC
GVFNDESRKVTAFCRISAGLSQKDLELINEKLGPYFNDDFEDPEFRHSNLEFGIVRPDVW
IDPRVSCVFVARGTELTLVKAGHPHCKTDYTLRFPRVMSIRFDKIYTSCLTVFDLMCMTD
SCLPVIKTTKQQLYLEDINQPFKKNTRLQTQIYSEILQGLEFLIYNGGVDKYRLDMEHLI
VQHSGRVVEVEGPTTFCIIVGDPLNWKKYENDSETDVVKMEWLLRIVALGRYAPFDPEEI
LYASPITRRSYKCFYDETGDSFTEPVKIKSLETFILRSDHMRLNAMEIAQLRAEINPPVR
TDKYTGIIAYFDKYAVFNVPESNVSAFYTAMEADFLFHGGRICKLTEHTKYIIADTQDDS
RVRAIDYFLSDNRNETALMFHTHDELLKHIREETAKARAKVLTE
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagggtgcattgcggtggcacccataggtgacaacatcgctactctgaactct
ttcaacgacttctgcagggcttgcgaagggatcaaaaactccccggatatagttggtaaa
acaacaattttgcatgagtatatgcagagcgttaagagcaaagccaaattatgtaaccgg
gatgtagataaatcgctgtttcccataatcaggctgttgttgcctcaatatgagagacat
cgcaatccctatcaattacaagaaagtacattcataaaagtactgatcaacaagttgtct
ttgactgctgaagaagcaacgctattgaagaaatataaagatattcatacagccagaaag
gcgggcgactttgcagatgtcgcatctgagatgctgagcaagcgttttttcgataaaggc
tctatgagtatatatgaacttaacagttatttggataacatatcgttctattcgactaat
aaaagtattcaagaagatactattttgagtgtaatatcagcaactacgccattagagcaa
aaatggtttataaggatcatcttcaaagatcttaaattggggttggggtataacaaaatc
ttaactagccttcattggactgcaccaaaactatttaaccgtttaagtagtttggaaaaa
atatgcaccatattgtctgctgagaacccaatagaaggtgatattgcagttcaattattt
tcatgcgttcgccctatgctatcaaagcgatgctgcaaagatattttttcgaagctgttt
ggaagagaacacgtatacttcatggaaacaaaatatgacggcgaaagattccagatacat
tataatcataatgttgtaaagttgttttcccgaaacggctttgattttacgagcaaattt
caagagttggttgatgttctgccatcacttataaagtcgaatgccaggaatttcatcata
gacggagaaatgatgctttggaataaggccgaaaaaaaattcgcgtctaaaggttatcgt
gtcgatgttaaaaacttaaaacctgaagatgaatatcaagcatgtttcgtcagctttgat
ttgatcttttggaatggatatccagcgattgataagcctcttttcgaaagaaaaatcttt
ctggaaaatatgattgaaaataaggaaggtgtttatctttactgtgattacagtgtagca
aagaagaaggctcatgtcattaattttatgaatgaggcaatgaacaatgctcaggaaggc
attgtaatgaaacgacatgattccaagtatttgcccaacgagagaacgggatggtacaag
ctaaaaccagactactttgacggactcgtaactgatctggatttagttgtaatgggtggc
aattatagcgatttgcgctctgaagcatattgcagtatgcaagttgtgcattttgtttgc
ggtgttttcaatgacgagagcaggaaagttacagcgttctgcagaatatcagctggtttg
tctcagaaagatttggaattgattaacgaaaagttgggaccatattttaacgatgacttc
gaggatcccgaattcagacattccaatttagagttcggtatagtgaggccggacgtttgg
attgatcctcgcgtatcctgcgtttttgttgcgagaggtaccgaattgactttagtcaaa
gctggtcacccccattgcaaaactgattatactctacgttttccaagagtcatgagtata
aggtttgataaaatctataccagttgcttaactgtattcgatctgatgtgtatgactgac
tcatgcttgcctgttattaagacaacaaagcaacaattatatttggaagatataaatcag
ccatttaagaagaacacacgtcttcaaacacagatctactccgagatattgcaaggcttg
gagttcttgatttataatggcggcgtggataaatatcgccttgatatggagcatttaata
gtgcagcacagcggtcgtgttgttgaagttgaaggaccaacgacattttgtatcattgta
ggagatccattaaattggaagaagtatgaaaatgacagtgaaactgatgtggttaaaatg
gaatggttgctgaggattgtagctttgggcagatatgccccatttgatccggaagaaatc
ttatatgcatcgccaataacaagacgttcatacaagtgtttttacgatgaaactggggac
tctttcactgagccggtgaagattaagtcactagaaacctttatcttaaggtctgatcat
atgcgtcttaacgctatggaaattgcgcaactgagagcggaaatcaatccgccagttaga
actgacaagtatactgggatcatagcttactttgacaagtatgctgttttcaatgtgcca
gagtccaatgtctctgccttctatacagccatggaggcagatttcttattccatggtggc
cgtatctgcaaactaacggaacacaccaagtatatcatcgctgatactcaagatgatagc
cgcgtaagagccattgattatttcctgtccgacaacagaaatgagacagctctaatgttt
cacactcacgatgaacttcttaaacacattcgtgaggaaactgccaaagccagagccaaa
gttttaaccgaataa
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