Nitrososphaera viennensis: NVIE_008430
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Entry
NVIE_008430 CDS
T03200
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nvn
Nitrososphaera viennensis
Pathway
nvn03030
DNA replication
nvn03410
Base excision repair
nvn03420
Nucleotide excision repair
nvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NVIE_008430 (lig)
03410 Base excision repair
NVIE_008430 (lig)
03420 Nucleotide excision repair
NVIE_008430 (lig)
03430 Mismatch repair
NVIE_008430 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nvn03032
]
NVIE_008430 (lig)
03400 DNA repair and recombination proteins [BR:
nvn03400
]
NVIE_008430 (lig)
Enzymes [BR:
nvn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NVIE_008430 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
NVIE_008430 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
NVIE_008430 (lig)
DNA replication proteins [BR:
nvn03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
NVIE_008430 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
NVIE_008430 (lig)
DNA repair and recombination proteins [BR:
nvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
NVIE_008430 (lig)
NER (nucleotide excision repair)
Other NER factors
NVIE_008430 (lig)
MMR (mismatch excision repair)
Other MMR factors
NVIE_008430 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIC15062
UniProt:
A0A060HPC3
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All DBs
Position
complement(693743..695542)
Genome browser
AA seq
599 aa
AA seq
DB search
MDFQPLVETFGKMEQTSSRLALTDHLVILLKQTPADLIDKVTYLIQGKLYPDYEGIEMGL
AERMALRAIASSSGKSMSEVEAIYRKTGDIGDTAGKAMVSKGQSTLFSEQMTVERVYCTF
DKIAKTTGPGSQETKLRLVASLLNDSTAEEGRYIMKFVMGALRLGIADYTVLDALAVAFT
GDKANRKVLENAYNVSSDLGTVAKLLATKGLAAVKAVQITLFKPIRPMLAERVSTAEEAM
ERMDSRAAVEYKLDGERVQIHKGRDRIELFSRRLEKITDHYPDVSKAAMSLACKEAIMEG
EVVAINLQTGEYLPFQQLMHRRRKHGIEEAMENYPVVINLFDILYLDGKSRTELPYEDRR
KLLEKTVKGAKADGMMLKIVPQVIATEPGEIDRFMASAIESGCEGVMVKMPSSTYRAGAR
EYLWVKLKREYRTELADTLDLVIVGALHGRGRRVGKYGALLLAAYDPKEDIFRSVTKVGT
GFTDVHLEQFYRELEKHVIHQKHARVDTGMDMEVWFEPAMVIEVIASEITLSPSHTAAMG
AIKDGYGLALRFPKFTGKIRDDKEPEAATTTDEIVTMYRHQLKIHSEAAKSKEEEKEEE
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
gtggatttccagccgctggtagagacgtttggcaagatggagcagacgtccagcaggctg
gcccttaccgaccaccttgtcatactgttgaaacagacgccggcagacctgatagacaag
gtgacgtacctcatccagggcaagctgtacccagactatgagggcatagagatgggcctt
gcagagcgcatggcgctccgggcaatagcaagctcgtcaggcaagagcatgtcagaggtt
gaagcaatctaccgcaaaaccggcgacattggcgacaccgccggcaaggcgatggtgtca
aagggccagtcgacgcttttttcagagcagatgacggtggagcgcgtctactgtacgttt
gacaagatcgccaagacgaccggtcccgggtcgcaggagaccaagctgcgccttgtcgca
agcctgctcaatgattccacggctgaagaggggcgctacatcatgaagtttgtcatgggg
gcgctcaggcttggcatcgcagactataccgtgcttgacgcgctggccgtagcgtttacc
ggcgacaaggcaaacaggaaggtactggaaaacgcctacaacgtttcaagcgaccttggc
acggttgcaaaactgcttgcgacaaaagggcttgccgcagtcaaggcggtgcagataacg
ctgttcaagccaatcaggcctatgcttgccgagcgcgtctcaacagccgaagaggcaatg
gaacgcatggacagccgcgccgccgtggaatacaaactggacggcgagcgggtccagatc
cacaagggcagggaccgcatcgaacttttctcccgcaggctggaaaagataaccgaccac
tatccagacgtgagcaaagccgcaatgtcgcttgcctgcaaggaggcaataatggaaggc
gaggtcgtggcaataaacctgcagacaggggagtacctgccgttccagcagctcatgcac
cgaaggcgcaagcacggaattgaagaagcgatggaaaactatccggtcgtcatcaacctt
ttcgacatcctctaccttgacggcaagagccggacagaacttccgtacgaggaccgccgg
aagctcttggaaaagacagtcaaaggcgccaaagctgatgggatgatgctgaaaatagtg
ccgcaggtcattgcgacagagccgggcgaaatagaccgctttatggcctctgccatagag
agcggctgcgagggagtcatggtaaagatgccgtcaagcacatacagggcaggggcccgc
gagtacctgtgggtgaagctaaagcgggaataccggacagaactagcagacacgcttgac
cttgtcatcgtgggcgcgctgcacggccggggaaggcgcgtgggcaagtacggcgccctt
cttctggcggcgtacgacccaaaggaggacattttcaggagcgtgacaaaggtggggacc
ggctttacagacgtgcaccttgagcagttttaccgcgagctggaaaagcacgtgatacac
caaaagcacgcccgcgtggacacaggcatggacatggaagtgtggtttgagcctgcgatg
gtcattgaagtcattgcgtcagaaataaccctgagcccgtcgcacaccgcggcgatggga
gccataaaggacggctacggccttgcgctgcggttccccaaattcacgggaaagatccgc
gatgacaaggaaccagaggccgcgaccacaactgacgagatagtgaccatgtacaggcac
cagctaaagatccactcggaagctgccaagtcaaaagaagaagaaaaagaagaggagtag
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