KEGG   Nitrososphaera viennensis: NVIE_008430
Entry
NVIE_008430       CDS       T03200                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nvn  Nitrososphaera viennensis
Pathway
nvn03030  DNA replication
nvn03410  Base excision repair
nvn03420  Nucleotide excision repair
nvn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nvn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NVIE_008430 (lig)
   03410 Base excision repair
    NVIE_008430 (lig)
   03420 Nucleotide excision repair
    NVIE_008430 (lig)
   03430 Mismatch repair
    NVIE_008430 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nvn03032]
    NVIE_008430 (lig)
   03400 DNA repair and recombination proteins [BR:nvn03400]
    NVIE_008430 (lig)
Enzymes [BR:nvn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NVIE_008430 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     NVIE_008430 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NVIE_008430 (lig)
DNA replication proteins [BR:nvn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NVIE_008430 (lig)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NVIE_008430 (lig)
DNA repair and recombination proteins [BR:nvn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NVIE_008430 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     NVIE_008430 (lig)
   MMR (mismatch excision repair)
    Other MMR factors
     NVIE_008430 (lig)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AIC15062
UniProt: A0A060HPC3
LinkDB
Position
complement(693743..695542)
AA seq 599 aa
MDFQPLVETFGKMEQTSSRLALTDHLVILLKQTPADLIDKVTYLIQGKLYPDYEGIEMGL
AERMALRAIASSSGKSMSEVEAIYRKTGDIGDTAGKAMVSKGQSTLFSEQMTVERVYCTF
DKIAKTTGPGSQETKLRLVASLLNDSTAEEGRYIMKFVMGALRLGIADYTVLDALAVAFT
GDKANRKVLENAYNVSSDLGTVAKLLATKGLAAVKAVQITLFKPIRPMLAERVSTAEEAM
ERMDSRAAVEYKLDGERVQIHKGRDRIELFSRRLEKITDHYPDVSKAAMSLACKEAIMEG
EVVAINLQTGEYLPFQQLMHRRRKHGIEEAMENYPVVINLFDILYLDGKSRTELPYEDRR
KLLEKTVKGAKADGMMLKIVPQVIATEPGEIDRFMASAIESGCEGVMVKMPSSTYRAGAR
EYLWVKLKREYRTELADTLDLVIVGALHGRGRRVGKYGALLLAAYDPKEDIFRSVTKVGT
GFTDVHLEQFYRELEKHVIHQKHARVDTGMDMEVWFEPAMVIEVIASEITLSPSHTAAMG
AIKDGYGLALRFPKFTGKIRDDKEPEAATTTDEIVTMYRHQLKIHSEAAKSKEEEKEEE
NT seq 1800 nt   +upstreamnt  +downstreamnt
gtggatttccagccgctggtagagacgtttggcaagatggagcagacgtccagcaggctg
gcccttaccgaccaccttgtcatactgttgaaacagacgccggcagacctgatagacaag
gtgacgtacctcatccagggcaagctgtacccagactatgagggcatagagatgggcctt
gcagagcgcatggcgctccgggcaatagcaagctcgtcaggcaagagcatgtcagaggtt
gaagcaatctaccgcaaaaccggcgacattggcgacaccgccggcaaggcgatggtgtca
aagggccagtcgacgcttttttcagagcagatgacggtggagcgcgtctactgtacgttt
gacaagatcgccaagacgaccggtcccgggtcgcaggagaccaagctgcgccttgtcgca
agcctgctcaatgattccacggctgaagaggggcgctacatcatgaagtttgtcatgggg
gcgctcaggcttggcatcgcagactataccgtgcttgacgcgctggccgtagcgtttacc
ggcgacaaggcaaacaggaaggtactggaaaacgcctacaacgtttcaagcgaccttggc
acggttgcaaaactgcttgcgacaaaagggcttgccgcagtcaaggcggtgcagataacg
ctgttcaagccaatcaggcctatgcttgccgagcgcgtctcaacagccgaagaggcaatg
gaacgcatggacagccgcgccgccgtggaatacaaactggacggcgagcgggtccagatc
cacaagggcagggaccgcatcgaacttttctcccgcaggctggaaaagataaccgaccac
tatccagacgtgagcaaagccgcaatgtcgcttgcctgcaaggaggcaataatggaaggc
gaggtcgtggcaataaacctgcagacaggggagtacctgccgttccagcagctcatgcac
cgaaggcgcaagcacggaattgaagaagcgatggaaaactatccggtcgtcatcaacctt
ttcgacatcctctaccttgacggcaagagccggacagaacttccgtacgaggaccgccgg
aagctcttggaaaagacagtcaaaggcgccaaagctgatgggatgatgctgaaaatagtg
ccgcaggtcattgcgacagagccgggcgaaatagaccgctttatggcctctgccatagag
agcggctgcgagggagtcatggtaaagatgccgtcaagcacatacagggcaggggcccgc
gagtacctgtgggtgaagctaaagcgggaataccggacagaactagcagacacgcttgac
cttgtcatcgtgggcgcgctgcacggccggggaaggcgcgtgggcaagtacggcgccctt
cttctggcggcgtacgacccaaaggaggacattttcaggagcgtgacaaaggtggggacc
ggctttacagacgtgcaccttgagcagttttaccgcgagctggaaaagcacgtgatacac
caaaagcacgcccgcgtggacacaggcatggacatggaagtgtggtttgagcctgcgatg
gtcattgaagtcattgcgtcagaaataaccctgagcccgtcgcacaccgcggcgatggga
gccataaaggacggctacggccttgcgctgcggttccccaaattcacgggaaagatccgc
gatgacaaggaaccagaggccgcgaccacaactgacgagatagtgaccatgtacaggcac
cagctaaagatccactcggaagctgccaagtcaaaagaagaagaaaaagaagaggagtag

DBGET integrated database retrieval system