Neogale vison (American mink): 122907236
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Entry
122907236 CDS
T08764
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122907236 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122907236 (LIG4)
Enzymes [BR:
nvs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122907236 (LIG4)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122907236 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
RTT107_BRCT_5
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
122907236
NCBI-ProteinID:
XP_044106018
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All DBs
Position
5:complement(163068416..163078211)
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AA seq
911 aa
AA seq
DB search
MAASQTSPTVASHVPFADLCSTLERIQRSKGRAEKIRHFREFLDSWRRFHSALHKNQKDV
KDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKGGKDALKLLNYRTPTGTRG
DAGDFATIAYFVLKPRCLQKGSLTIQQVNDILDSIASNNSARRKDLIKKSLLQLISQSSA
LEQKWLIRMILKDLKLGFSEQSVFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKQGGEYQYFSRNGFNYTD
QFGKSPQEGSLTPFIHSAFQPDIQICILDGEMMAFNPNTQTFMQKGTKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLKKRYEILTSVFTPIPGRIEIVQKTQAHTQKEVVDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLVDELDILIVGGYWGKGSRGGMM
SHFLCAVAETPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHRKAPPSSILC
GTEKPEVYIEPCHSVIVQVKATEIVPSDMYQTGCTLRFPRIERIREDKEWHQCTTRDGLE
QLRGKASGKLASKHLYVGDGDEPQEKTRRAAPKMRKVIGIIEHLKAPNLSNVNKVSNIFE
DVEFCVMNGTDGHPKPDLENRIAELGGYIVQNPGPDTYCVIAGSENIRVKNIISSDRHDV
VKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFVDTDLNRLKEVFSG
IKSPSAQAPGEMASVVADVEHQYSWDGHPLSMFRRHVVYVDTCAVVNDLSTSIEGTRLAV
TALELRFHGAKVVSHLAQGVSHVIVGEDQSRVADLKAFRRTLKRKFKILQQDWVTDSIDK
CELQEENQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctcgcagacttcaccaactgttgcatctcatgttccttttgcagacttgtgt
tcaacgttagaacgaatacagagaagtaaaggacgagcagaaaaaatcagacacttcagg
gaatttttagattcttggagaagatttcacagtgcccttcataagaaccaaaaagatgtc
aaagactctttttacccagcaatgagacttattcttcctcagctggaaagagagagaatg
gcgtatggaatcaaggaaaccatgcttgctaaactttatatcgaattgcttaatttgcct
aaaggaggaaaagatgcccttaaacttttaaattacagaacgcccaccggaactcgtgga
gatgctggtgactttgcaacaattgcatattttgtgttgaaaccaagatgtttgcagaaa
ggaagtttaaccatacagcaggtaaatgacattttagactcaattgccagcaataattct
gccagaagaaaggacctaattaagaagagtcttcttcagctaataagtcagagttcagca
ctggaacagaagtggcttatacggatgattttaaaggacttaaaactcggtttcagtgaa
cagtctgtattttctgttttccataatgatgctgccgagttgcataacgtcaccacagat
ctggaaaaggtgtgtaggcagctgcatgacccttccgtaggactcagtgacatctccatc
actttattctcagcctttaaaccgatgctggctgctatagcagacattgagcggatcgag
aaggacatgaaacaccagagcttctacattgaaaccaagctcgatggggagcgcatgcaa
atgcacaagcagggtggggagtaccagtacttctcccgaaatggatttaactacacggat
cagttcggcaaatctccacaggaaggttctcttacaccgttcattcacagtgcgttccag
ccagacatacagatctgtatcctggatggcgagatgatggccttcaaccccaacacacag
actttcatgcaaaaggggactaagtttgatatcaagagaatggtggaggattctgatctg
cagacttgttactgtgtgtttgatgtactgatggttaataataaaaagctgggacgtgag
accctgaaaaagaggtatgagattcttaccagtgtttttacaccaataccaggtaggata
gaaatagtgcagaagacacaagctcatactcagaaagaagtggtcgatgctttgaatgaa
gcaatagataaaagagaagaggggatcatgataaaacatcctctgtcgatttacaagccg
gacaaaagaggcgaaggatggctgaagattaaaccagagtacgtggacgggctggtggat
gagctggacatcttaatcgtcgggggctactggggtaagggttcccgagggggcatgatg
tctcatttcttatgtgccgtagcagagacgcctcctcctggtgaaaaaccgtcggtgttt
catactctgtgccgtgttggttcaggttacaccatgaaagaactgtacgatctgggtttg
aagttggccaaacactggaagcctttccataggaaagctccaccgagcagcattttgtgt
ggaacggagaagccagaggtgtacattgagccttgtcattctgtcattgttcaggttaag
gccacagagatcgtccccagcgacatgtatcagactggctgcacgctgcgtttcccacga
atcgagaggatccgagaagacaaagagtggcaccagtgcaccacccgggacgggctggag
cagcttcgcgggaaggcctcgggaaagctggcttccaaacacctgtacgtcggcgacggc
gatgagccacaagaaaagacgcggagggctgccccgaagatgaggaaagttatcgggatc
atcgagcacttgaaagcgcccaacctttctaatgtaaacaaagtgtcgaatatatttgaa
gacgtggagttctgcgtcatgaacggcacggacggccatccgaagcccgatctggagaac
agaattgccgaattgggtggttacatagtgcagaatccaggcccagacacgtactgcgtc
attgcagggtccgagaacatcagagtgaaaaacatcatttcttcggacagacatgatgtc
gtcaagcccgagtggctgttggaatgttttaagaccaaaagctgcgtgccgtggcagcct
cgctttatgattcacatgtgcccgtcaacgaaggagcattttgcccgtgaatacgattgt
tatggtgatagttatttcgttgatacagatttgaaccgactgaaggaagtgttctcggga
atcaaaagtcccagcgcgcaagctcctggagaaatggcttcagtggttgccgacgtagag
caccagtattcctgggacggccaccctctcagtatgtttcggcgccacgtggtttacgtg
gacacgtgcgctgttgtgaatgacttgagtaccagcatcgagggaacacgattagccgtt
acggctttggagcttcggtttcatggagccaaagtggtttctcatttagctcagggagtg
tctcatgtcatcgttggggaggatcagagtcgtgtggcagatttaaaagcttttcgaaga
actcttaagagaaagtttaaaatcctgcaacaagattgggtcactgattcaatagacaag
tgtgagttgcaggaggaaaatcagtacttgctttaa
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