Neogale vison (American mink): 122907272
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Entry
122907272 CDS
T08764
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03013
Nucleocytoplasmic transport
nvs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122907272 (UPF3A)
03015 mRNA surveillance pathway
122907272 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122907272 (UPF3A)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122907272 (UPF3A)
mRNA cycle factors
P-body specific factors
122907272 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
122907272
NCBI-ProteinID:
XP_044106113
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Position
5:167136322..167171784
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AA seq
557 aa
AA seq
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MRSEKEGVGGSGAAVAARGPSGREKVSAVEVQFRRESPRREPEAPPASAFGCGGGTSKPR
EEKKTVLSKVVIRRLPPGLTKEQLEEQLHPLPAHDYFEFFTADLSLYPHLYSRAYINFRN
PDDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKIKKKDAKTGSIEDDPEYKKF
LETYCVEEEKPNANPETLLGDIEAKTRELIARRTTPLLEYIRNRKLEKQRIREEKREERR
RRELEKKRLREEEKRKKREEERCKRKEADRQKRAAEREVRIKLLKKPEKGEEPTEKPKER
AEEVDIGDGKREPWAVLKPTPFGSLVEEPREKSQNDSDKEQRELESRFREKEPETQRCHV
DDSTKHGAPCEVAKFPRRNEEEPKWGKGDPPDTGKKGNQDSGVPVEAAEWPGREHRSEGG
PAPKAERLGNKDRPALQLYQPGARIRAQETGGGVSMEGHDGSRGEAEDSAWAGSQKSEEA
GQSLSPTWAPLTQHGAHTLPTEPARYLGHPSILYRFHLVHSPQHGNSASAKGDSGTHTKL
LGTLFYHQEGFSGKLIQ
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcagagaaggagggggtgggaggctccggggcggccgttgccgcgcggggcccg
agcgggagggaaaaggtatctgctgtggaagtccaattccgccgggagtcgccgcggcgg
gaaccagaggcgccaccagcctcggccttcggctgtgggggcggtacaagcaaacctcgc
gaggagaagaagacagttctgagcaaggtggtgatccggcggctgccgcccggcctcacc
aaggagcagctggaggagcagctgcacccgctgcccgcgcatgactacttcgagttcttc
acggccgacttgagtctttatcctcatctttactcaagagcatacattaattttagaaat
cctgatgacatccttctttttagagatcgtttcgatggctatatcttcatcgacagtaaa
ggcctagaatatcctgcggtggtagagtttgccccattccagaagatagccaaaaagaaa
ataaagaaaaaagatgccaaaactggaagcattgaagacgatccagaatataagaagttt
ttggaaacttactgtgtggaggaagagaaacctaatgccaatcctgaaactctcctggga
gacatagaggcaaagactagagaacttattgctagaagaaccacacctcttttggaatat
attagaaatagaaaattagagaagcagaggattcgagaagagaagcgagaagagcgaagg
agaagggagctggagaagaagcgtttacgggaagaagaaaagagaaaaaagagagaagag
gagaggtgtaagaggaaggaggcggacagacagaagagagctgctgagagagaagtaagg
attaagcttcttaagaaaccggaaaagggggaggaaccaactgaaaagccaaaagaaaga
gcagaggaagtggatatcggagatggaaaacgggagccctgggctgtcctgaagcccacg
ccctttgggagcttggtggaggagcccagggaaaagtcacagaatgacagtgataaagag
caaagggagctggagagcagatttcgagaaaaagagcctgaaacacagagatgccacgtg
gacgacagcacaaagcacggagctccctgtgaggtagccaagtttccaaggagaaacgaa
gaagagccaaaatgggggaaaggagaccccccagacacagggaagaaggggaaccaggac
agtggcgtccctgtggaggcagcagagtggcccgggagagagcacaggagtgaaggcggc
ccagcacccaaagcagagcgtctgggaaacaaggaccggccagccttgcagctgtaccag
ccaggagctcgcatccgagcacaagaaactggtgggggagtctccatggagggccatgat
gggagcaggggcgaggctgaagattcggcgtgggctggttcccagaagagtgaagaggca
gggcaatctctatccccgacatgggctccactcactcaacatggggctcacactctccca
actgagccagccaggtacctcggacacccttcgattctctaccggttccatctggtgcac
tcccctcagcatgggaactcagcaagtgccaaaggagattctggaacacacaccaaatta
ctgggcacactattctatcatcaggaaggtttttctggcaaacttatccaatga
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