Neogale vison (American mink): 122909565
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Entry
122909565 CDS
T08764
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs03013
Nucleocytoplasmic transport
nvs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122909565 (UPF1)
03015 mRNA surveillance pathway
122909565 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvs03019
]
122909565 (UPF1)
Enzymes [BR:
nvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122909565 (UPF1)
5.6.2.5 RNA 5'-3' helicase
122909565 (UPF1)
Messenger RNA biogenesis [BR:
nvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122909565 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
122909565 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
122909565
NCBI-ProteinID:
XP_044109797
LinkDB
All DBs
Position
6:complement(212208261..212246505)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcagagttcgagttcaccgacttcactctc
cctagccagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggttggcgcgggcgcaggagctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggctgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaacttcgaagaagatgaggaggatacctattacactaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgcggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaggccgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgctttctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatcactgcc
cagcagatcaacaagctggaggagctctggaaggaaaatccttctgccaccttggaggac
ctggagaagccaggtgtggacgaggagccgcagcacgtgctcctgcggtatgaggacgcc
taccagtaccagaacatattcgggcctctggtcaagctagaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcagggggatgagatatgtctgaggtacaaaggg
gatctggcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggtgcgcctgtggaggtgacgcataac
ttccaggtggatttcgtgtggaagtccacctcatttgataggatgcagagtgcattgaaa
acgttcgctgtggatgagacgtctgtctcgggctacatctaccataagctgctcgggcat
gaggtggaggacgtgatcatcaagtgccagctgcccaaacgcttcacagcacaggggctc
cccgacctcaaccattcccaggtttatgctgtcaagactgtgctgcagagaccgctgagt
ttgatccagggaccaccaggcacagggaagacagtgacctctgccaccatcgtctatcac
ctcgctcggcagggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggac
cagctgacagagaagatccaccagactgggctgaaggtcgtgcggctctgcgccaagagc
cgtgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctgcagaagctgcagcagctgaaggacgagacgggggagctgtcc
tctgctgacgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatg
aacgcagatgtcatctgttgcacgtgtgtgggtgcaggggacccgaggcttgccaagatg
cagttccgctccattttaattgacgagagcacccaggccacggaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggcgaccactgccagctgggccct
gtggtgatgtgcaagaaagcggccaaagcgggactgtctcagtcgctcttcgagcgcctg
gtggtgctgggcatccgccccatccgcctgcaggtccagtaccggatgcatcccgcactc
agcgccttcccttccaacatcttctacgagggctccctccagaacggcgtcactgcagcg
gaccgagtgaagaaggggtttgacttccagtggccccagcctgataagccaatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccacaaagctgctgaaggcaggggccaagcccgac
cagatcggcatcatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgca
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcgggtttttaaacgaccccaggcggcttaatgtggccctgaccagagcgaggtac
ggggtcattatcgtgggcaacccgaaggccctgtccaagcagccgctctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgcgag
agcctcatgcagttcagcaagcccaggaagctcgtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccatcatccccggatcggtctacgat
cgcagcagccagggccggccctcaaacatgtacttccagacccacgaccagattggcatg
atcagcgcgggccccagccacgtggccgccatgaacattcccatccccttcaatctggtc
atgccccccatgccaccgccagggtacttcggacaagcaaacgggccggccgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaagacgtggcgtcgcagccg
ttctcccagggcgccctgacccagggctacatctccatgagccagccctcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggtgatgagtttaag
tcacagattgatgtggcactgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
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