Neisseria weaveri: SAMEA3174300_0558
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Entry
SAMEA3174300_0558 CDS
T04355
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nwe
Neisseria weaveri
Pathway
nwe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA3174300_0558 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwe03400
]
SAMEA3174300_0558 (mfd)
Enzymes [BR:
nwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA3174300_0558 (mfd)
DNA repair and recombination proteins [BR:
nwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA3174300_0558 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SAY50678
LinkDB
All DBs
Position
1:complement(619631..623059)
Genome browser
AA seq
1142 aa
AA seq
DB search
MNHPIPAPAQKSRWLDLSRGSLPFFLARCLPEKPVKIILTQDVEQALRLQTAWQFFRPQD
NAVFLPDWETLPYERFSPHQDLVSERLSALWQLKNGQADVLVVPVATAMQKLAPLSFLLG
RTFWLKTGQTLDIDALRENLVEAGYSHVSNVIAAGEFALRGGILDIFPSGSDAPYRLDMF
GDEIDSIKTFDPDTQRTIAPVSEIRLLPAHEFPTDDDAQKIFRSRFREEIEGDYNAATVY
KAVSSGHFGAGVEYYLPLFFENELATLFDYIGEEALVVCIGDVHAEASRFWSDVKSRFAM
AKGDETYPPLHPQHLYLSEDQFAGRLKPYGQILPDFHGKQHALPDVAVNRQSETPLAALQ
SFQTAFNGKVLLCAESAGRRETMLGFMQQHGLKAQSVDGWQAFLDSDAPLCITVTQLAYG
FQLPSEQADSTDLPYFSDGLAVITESDLYQYVARSRTARRKKHAQVSDGLLRDLAEINIG
DPVVHEEHGIGRYMGLVSMDLGEGSTEMMLLEYANEAQLYVPVSQLHLISRYSGHAYENV
QLHRLGTAAWSKAKRKAAEKARDTAAELLNLYAQRAAQEGFKFQFNELDYQAFSDGFGYE
ETEDQAAAIAAVLKDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTL
LVEQHAQNFSDRFADFPVKVAQLSRFNSSKETKATLAGMADGTVDIVIGTHKLVQDDIQF
KNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTLTATPIPRTLSMALEGLRDFSLITTAP
SRRLAVKTFVKPFSEASVREAVLRELKRGGQVFFLHNEVETIENMRERLQELLPEARIGV
AHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPEYITKDAEKRLDAISAADELGAGFTLAMQDLEIRGAGEILGEG
QSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHSPALLPESYCPDIHE
RLVLYKRLATCETEGQINSVHEELVDRFGLPEQPVKTLIESHRIRLTAKEMGIDAIDATS
DAVTLTFGKHHNIDPAQIILLMQSNKNYRMAGADKLRVSAVMEDVETRIQTVKAVLKKLG
EK
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatcctatccccgcccccgcccaaaaatcccgctggctcgacctttcccgcggc
agcctgccgttcttcctagcccgatgcctgcctgaaaagcccgttaaaatcattctcacg
caagatgtggagcaggccttgcgcctgcaaaccgcgtggcagtttttccgcccgcaggat
aatgcggtgtttctccccgattgggaaacgctgccctacgagcgtttttcgccgcatcag
gatttggtttcggagcggctttctgccttgtggcagctgaaaaacgggcaggccgacgtg
ttggtggtgccggtggccaccgccatgcagaagctcgctccgttgtcgtttctgctcggg
cgcacgttttggctgaaaaccggccaaactttggatatcgacgcgctgcgggaaaacttg
gtggaagccggttacagccatgtttccaacgtgattgccgccggcgaattcgccctgcgc
ggcggcattttggatattttccccagcggcagcgacgcgccctaccgcttggatatgttc
ggcgacgaaatcgacagcatcaaaaccttcgaccccgacacccagcgcaccatcgcgccc
gtttccgaaatccgcctgctgcccgcgcacgagttcccgaccgacgacgacgcgcaaaaa
atcttccgcagccgtttccgcgaagaaatcgagggcgactacaacgccgccaccgtttac
aaagccgtgagcagcggccatttcggcgcgggcgtggaatattatctaccgctgtttttt
gaaaacgaattggccacgctgttcgactacatcggcgaagaagcgctggtggtctgcatc
ggcgacgtgcacgccgaggcttcgcgcttttggtcggatgtcaaatcgcgctttgcgatg
gctaagggcgatgaaacttacccgcctttgcatccacagcatttgtatctcagtgaagac
cagtttgcaggccgtctgaaaccttacggccaaatcctgcccgacttccacggcaaacaa
cacgcgctgcccgatgtggccgtgaaccgccaatccgaaaccccgcttgccgcgctgcaa
agttttcagacggcctttaacggcaaagtgttgctgtgcgccgaaagcgcgggccgccgc
gaaaccatgctcggctttatgcagcagcacggcttgaaagcgcaaagtgtggacggctgg
caggcgtttttagacagcgatgcgccgttgtgcattaccgtaacgcagttggcttatggg
tttcagttgccgtctgaacaggccgacagcacagacttgccctatttttcagacggcctt
gccgtcatcaccgaatccgacctctaccaatacgtcgcccgcagccgcaccgcgcgccgt
aagaaacacgcccaagtttcagacggccttttgcgcgatttggccgaaatcaacatcggc
gaccccgtggtacacgaagagcacggcatcggccgctatatgggcttggtcagcatggat
ttgggcgaaggcagcaccgaaatgatgctgctcgaatacgccaacgaagcccagctttat
gtgcccgtgtcgcagctgcacctgatcagccgctattcaggccatgcctatgaaaacgtg
caactgcaccgcctcggcaccgccgcatggagcaaagccaaacgcaaagccgccgaaaaa
gcccgcgacaccgccgccgaactgctcaatctttacgcccaacgtgccgcacaagaaggc
tttaaattccagtttaacgagttggactaccaagccttttcagacggcttcggctacgaa
gaaaccgaagaccaagccgccgccatcgccgccgtactcaaagacctcacccaaggcaaa
ccgatggacaggctcgtgtgcggcgatgtcggcttcggcaaaaccgaagtcgccctgcgc
gccgccttcgtggccgtgatgggcggcaaacaagtggccgtgcttgcgcctactactctg
ctggtggaacaacacgcacaaaatttcagcgaccgattcgccgatttccccgttaaagtc
gcccagctttcccgcttcaacagcagcaaagaaaccaaagccacgctcgcaggcatggcc
gacggcacggtcgatatcgttatcggcacgcataaactcgtgcaagacgatatccaattc
aaaaatttaggtttggttatcatcgacgaagaacaccgcttcggcgtgcgccaaaaagag
caactcaaacgcctgcgcgccaacgtcgatatcctcaccctaaccgccacccccattccg
cgcaccctcagcatggcgctcgaaggattgcgcgatttctcgctcatcaccaccgcgccc
agccgccgtttggccgttaaaaccttcgtcaagcccttcagcgaagccagcgtgcgcgaa
gccgtgctgcgcgaactcaaacgcggcgggcaagtattctttttacacaacgaagtcgaa
accatcgaaaacatgcgcgaacgcctgcaagagctgctgcccgaagcccgcatcggtgtc
gcccacggccaattgcgcgagcgcgaactcgaacaagtgatgcgcgacttcctgcaacaa
cgcttcaacctgctgctgtgttccaccatcatcgaaaccggcatcgacatccccaacgcc
aacactatcatcatcaaccgcgccgacaaattcggccttgcccaactgcaccaattgcgc
gggcgtgtcggccgcagccaccaccaagcctacgcctacctgctcacgcccgaatacatc
accaaagatgccgaaaaacgcctcgatgccatttccgccgccgacgaactcggcgcaggc
ttcacccttgccatgcaggatttggaaatccgcggcgccggcgaaatcctcggcgaaggg
caaagcggcgaaatgatgcaggtcggcttcaccctctacaccgaaatgctcaaacaagcc
gtgcgcgacctcaaaaaaggccgccagcccgacctcgacgcaccgctgggcgttaccacc
gaaatcaaactgcacagccccgcgctcttgcccgaaagctactgccccgacatccacgag
cggctagtgctctacaagcgcctcgccacctgcgaaaccgaaggccaaatcaacagcgtg
cacgaagaactcgtcgaccgcttcggcctgcccgaacaacccgtcaaaacactaatcgaa
agccaccgcatccgcctgacggccaaagaaatgggcatagacgcaatcgatgccaccagc
gacgccgttaccctcaccttcggcaaacaccacaacatcgaccccgcgcagattatcctg
ctgatgcaaagcaacaaaaactaccgcatggccggtgcagacaaattgcgcgtaagcgcg
gtgatggaagatgtggaaacacggattcaaacagtgaaagcggttttgaagaagttgggg
gagaagtaa
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