Nematolebias whitei (Rio pearlfish): 119409260
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Entry
119409260 CDS
T08042
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119409260 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119409260 (smarcc1a)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119409260 (smarcc1a)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119409260 (smarcc1a)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119409260 (smarcc1a)
PBAF complex
119409260 (smarcc1a)
GBAF(ncBAF) complex
119409260 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT_2
BRCT
Motif
Other DBs
NCBI-GeneID:
119409260
NCBI-ProteinID:
XP_037532038
LinkDB
All DBs
Position
5:6560936..6587603
Genome browser
AA seq
1139 aa
AA seq
DB search
MATAATTAGGTGSSGPATGSVGSGTAVGRKKDGGPSSKFWESSETISQLETVRLWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPPLTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPLVYLSPDIEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSLSQQEEEEWLRPVLRKDKQVLVHWGFYPDSYDTW
VSAGDVESDVEDPLSTDRPWKVHAKWVQDTDAFNEWMNEEDYEVDENKKPVNFRQRIFPK
EEESSRTPDRKERKANSASKKRRRSPSPPSTPAESRRKGGKKGNSGPHWKRRGHRGEEED
TEDDMTKDLDDSSAGASMEDGCVSKNANSKKDSENTPVKGGNVADLDDMEDDSVLSGGKD
DEEHGKGEINRLDASEDNVTEQTHHIIIPSYAAWFDYNSIHQIERRALPEFFNGKNKSKT
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSES
RPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPPQIPAPQPMPNFADKSKDKPIDLQNFGL
RPDLFKKNAKPGKGACTTRDWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFL
RLPIEDPYLESTETSMGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEF
SRVREEVPAELVEAHVKKVQEAAKSTGKVDPAFGLESSGIAGTAPEEPEKTEATEPEKMD
TDSDSQQADKAELKDEAEKPSESAEKSDKTETTEKVKKEGGEASEREEENEEEGEAKTDS
ADKDKEEPMLTSSSEQEKEEKAATEEGEDKKKKLEHDIGEGNIATAAAAALASAATKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFH
MEQLKYAEMKARQQMEQQAAAAAAAAAQAQGQGQAPGSGPHPGPHPPGMHHGGPMPHHGG
PPHHGGPPSHHGGPPPHHGGPPPGAAIHHGYPPMGHHPMAPHHPGQTGPLEPGQPMPGRM
MSVPPSAGPPPGGIPPMMPPRHPGAPNGMYPGPPPAQPEAIPPVPVGPPAPPSGRVADN
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacagcaggcggaacaggctcaagcggaccagctacgggttcg
gtaggcagcggaactgctgtaggacgaaagaaagacggcggcccttcttcgaaattttgg
gaaagttctgagacgatatcccagctggagacggtgcggctttggatcggaaagcactac
aagaagtatgtccagaacgactctccctccagtaagtctttggctggcctggtggtccag
ctgctgcagttccaagaggatgcgtttggacggagggtcaacaatcctcctcttaccaag
ttacctgccaagtgttttttggattttaaggcgggaggtgctctctgtcacattttagga
tcagtttacaaatttaaaagcgagcagggctggcgaagatttgacctgcagaatccctca
cggatggacaggaatgttgaaatgttcctaaatgttgagaagaacctggtccagaataac
tgcttgactcggcccctcgtctacctgtcaccagatattgagcagaaacaagccaataag
ctcaaagacatcatcaaaagacaccagggctccattacagaggataagtcaaaggccacc
caccacatttacccttctctgtctcagcaggaagaagaggagtggttgcgtcctgtcttg
aggaaggacaagcaggtgctcgttcactggggcttctacccagacagctatgacacgtgg
gtgtctgctggtgacgtggagagtgatgtggaagatcctctcagcaccgaccgaccctgg
aaggttcacgccaagtgggttcaagacacagatgccttcaatgagtggatgaacgaggaa
gactatgaagtagacgagaacaagaagccagtgaacttcaggcagaggattttccccaaa
gaggaagagtcttcccgtacacctgatcgcaaggagcgcaaggcaaactctgccagcaag
aagaggagacgctcgccctcgccacccagcactcctgcagagtcccgtaggaagggagga
aagaaggggaactcaggaccgcactggaagcgacgaggccacagaggagaagaggaagac
acggaggacgacatgacaaaggacttggacgactcgtctgctggcgccagcatggaggac
ggctgcgtgtccaagaatgcaaattcaaaaaaagacagcgagaacactccagtcaaagga
gggaacgtggcagacttggatgacatggaagatgattctgtgctgtctggtggaaaggat
gatgaagaacatggcaaaggggagatcaaccggctggatgccagcgaagacaacgtgact
gaacaaacacaccacatcatcatcccaagttatgctgcctggtttgattacaacagcatc
catcagattgagagaagagccttgcccgagtttttcaacgggaaaaacaagtccaaaact
ccagaaatatatttggcctatcgtaatttcatgattgacacgtatcggctgaaccctcag
gaatacctcacctccacttcctgccgcaggaacctgaccggggacgtctgcgccatcatg
agggttcatgcattcctggagcagtggggtttggtgaattaccaggtggattctgagagc
cgcccactgcccatgggcccccctcccacaccacacttcactgttctggctgatacaccc
tctggactcatgcccctcaaccaccgacccccacccccacagattcccgctccacaacca
atgcccaactttgcagataaaagcaaagacaaaccaattgatttgcaaaattttggcctc
cggcccgacctcttcaagaagaacgctaagccgggaaaaggagcctgcaccaccagagac
tggacggagcaggagactctgctgttgctcgaggctctagagatgtacaaagacgactgg
aacaaggtgtcggaacatgttggttcacgcacccaagatgaatgtatcctgcacttcctt
cggctcccaattgaagatccgtatcttgagagcacagagacatccatgggccctttggcc
taccagcccatccccttcagccagtctggaaaccctgtcatgagcacagtggccttcctg
gcctccgtagtggaccccagagttgcttcagctgctgccaaggcagccttagaggagttc
tctcgtgtgcgtgaggaggttccggctgagttggtggaagcccatgtgaagaaggtgcaa
gaggcggcgaagagcacgggcaaagttgaccccgctttcggcctggagagcagcggcatc
gctggaactgcccctgaagaaccagaaaagaccgaagccacagaaccagaaaagatggac
acagattcagactctcagcaggcggataaggctgagttgaaagacgaggcagagaagccc
agcgagtctgcagagaagagtgacaagacggaaacgacagaaaaggtgaagaaagaggga
ggggaggcatcagagcgcgaagaagagaatgaagaagaaggggaggctaaaactgattca
gcagacaaggataaggaggaacctatgctgacctcctcctcggagcaggagaaggaagag
aaggcagctacagaagaaggagaggacaagaagaagaagctggagcatgacattggagag
gggaacattgccaccgcggctgcagctgccctggcatctgctgccaccaaggccaagcac
ctggctgcagttgaggaaaggaagatcaagtctctggttgctctgctggtggaaactcag
atgaagaagctggagatcaagctgaggcacttcgaggaacttgagacgattatggaccgt
gaaaaggaagccttggaacttcagcggcagcagctcctcaccgagcgacaagcgtttcac
atggagcagctcaaatacgccgagatgaaggcgaggcagcagatggagcagcaggctgct
gctgctgcagccgctgcagcccaggctcaaggacaggggcaggctcctggatcagggccc
caccctggcccccatccgcctggcatgcaccacggaggtcccatgccccaccacggagga
ccgcctcatcatggaggacctccatcccaccatggaggacccccacctcatcatggaggg
cccccacccggcgctgcaatccaccacggttaccccccaatgggccaccacccgatggca
cctcaccacccaggacagaccggaccactggaaccaggtcagccgatgccgggacgtatg
atgtctgttccaccctctgctggcccccctcctggaggcattcctcccatgatgccccca
cgccaccctggagcccccaacggcatgtatccgggtcccccgcctgcacaacctgaggcg
atacctccagttcctgtgggtcctccagcgcctccgagtggacgagtggcggataactaa
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integrated database retrieval system
