Nematolebias whitei (Rio pearlfish): 119414681
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Entry
119414681 CDS
T08042
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03013
Nucleocytoplasmic transport
nwh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119414681 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
119414681 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119414681 (thoc1)
03041 Spliceosome [BR:
nwh03041
]
119414681 (thoc1)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119414681 (thoc1)
Spliceosome [BR:
nwh03041
]
Complex C
Other components
EJC/TREX
119414681 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119414681 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
DUF6673
DUF3179
Motif
Other DBs
NCBI-GeneID:
119414681
NCBI-ProteinID:
XP_037537710
LinkDB
All DBs
Position
9:38276411..38306828
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AA seq
653 aa
AA seq
DB search
MSPSLFNFVNAKEKFMTAARDALDGKTCKQVVNVFNQISGNETEKKTTLDQALRGVLGDL
MDERKDNCDDCLSLIYLSIDAVTEGICSATTPFILLGDVLDCLPLDLCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLENVTVFNKNEQETTFGQKTVEKEDGMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWMLQ
DYFRNPLQCYEKFLWITFVKYSDETLAVFKSYKLDDTQASKKKMEELRASDGEHVYFAKF
LTSEKLMDLQLSDSNFRRHILVQYLILFQYLKGQVKFKSSSCVLNDDQNTWIEDTTKLVY
QLLREIPPDGDKFASMVEHILNTEENWNAWKNEGCPSFVKERTVDEKPKRPTRKRQAPED
FLGKGPDRKIFMGNDELTRLWNLNQDNMEACKSDSREFLPSLDEFFTEAIEQADPANMVE
EEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSEE
IKTGEEDDDENGDNLLKDSNDSPSIQSKLVTNQQMDDVAAKLGSQWKTLASHLEMKAADL
REIETDSEDIDMQAKLLLVAWQDREGTQATVENLVTALNAAGYSQLADSLNES
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgtccttgttcaattttgtcaacgctaaagagaaatttatgactgctgctaga
gatgcgttagatggtaaaacctgcaagcaagtagttaatgtgtttaatcagatctccggg
aatgagacagaaaagaagaccacactagaccaggctttgaggggtgttcttggtgatctg
atggatgagcggaaggataactgtgatgattgtctgtccctcatctacttgagtattgac
gctgtcactgagggtatctgctccgctacgactccttttattctgcttggagatgttctg
gactgccttcctcttgacctgtgtgacaaaatattctcttttgttgaggaaaatgtttct
acatggaaatcgaactccttttatactgcagggaagaactatttgctgaggatgtgcaac
gatcttttaaggaggctgtccaaatcccagaacacagtattctgtggaagaatccagctt
ttccttgcacggctctttcctttgtctgaaaaatcgggcctcaacctacagagccaattt
aatctggaaaatgtaacagtatttaacaaaaatgagcaagaaaccacttttggccagaag
acagttgaaaaggaagatggtatggaggtggaggagggggagatgggggaggatgatgcc
cctgcgccatgttctattcccattgactacaacttgtacagaaagttctggatgttgcag
gactacttcagaaatccgttgcagtgctacgaaaaattcttgtggataacatttgttaag
tactctgatgagaccctcgctgtgttcaagagctacaagctggatgacacgcaggcttct
aagaagaagatggaggagctgagagcatctgatggggaacatgtttacttcgccaagttc
ctcacaagtgagaagttgatggacttgcagctcagcgacagcaacttcaggcgtcacatt
cttgtacagtatctcatcctctttcagtatctgaaggggcaggtcaaatttaaaagctcc
agctgcgtcttgaatgatgaccagaatacatggattgaagatacaactaaacttgtgtat
cagctgctgagagaaattcctcctgatggagacaagtttgcctccatggttgagcatatc
ctcaacacagaggaaaactggaacgcctggaaaaacgagggatgtccgagctttgttaag
gaaagaacagtagatgagaaaccgaaaaggcccaccaggaaaagacaagctccagaggac
ttccttggaaaagggccagaccgaaagattttcatgggaaatgatgagttgactcgactg
tggaacctgaaccaggacaacatggaagcgtgcaagtccgacagcagagagttcctgcca
tcgctggacgagttcttcactgaagccattgagcaggctgaccccgccaacatggtggag
gaggagtataaggttgtgcgtaacccaaactatggctggcgagctttgaggctgctgtcc
aggagaagtcctcacttctttcaaccaacaaaccaaaagtttaagagcttggcggattac
ctggacagcatggttagcaaactggccaaagaactaccgaaagatattccctcagaagaa
atcaagactggggaagaggatgatgatgaaaatggagacaatcttctgaaagacagcaac
gacagtccaagcattcagagcaaactggtgacaaaccagcagatggatgacgtcgcagcc
aaactgggctcccagtggaaaacgctggcttctcatttggagatgaaggcggcagatttg
cgggaaatcgagaccgacagcgaggacattgacatgcaggccaaacttctgctggtggcc
tggcaggacagagaaggaacacaagctactgtggagaacctggtcacagctctgaacgct
gcaggctactcccagctggcagacagtctcaacgagtcttaa
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