Nematolebias whitei (Rio pearlfish): 119415243
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Entry
119415243 CDS
T08042
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03030
DNA replication
nwh03410
Base excision repair
nwh03420
Nucleotide excision repair
nwh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119415243 (lig1)
03410 Base excision repair
119415243 (lig1)
03420 Nucleotide excision repair
119415243 (lig1)
03430 Mismatch repair
119415243 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nwh03032
]
119415243 (lig1)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119415243 (lig1)
Enzymes [BR:
nwh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119415243 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
119415243 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
119415243 (lig1)
DNA replication proteins [BR:
nwh03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
119415243 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
119415243 (lig1)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
119415243 (lig1)
NER (nucleotide excision repair)
Other NER factors
119415243 (lig1)
MMR (mismatch excision repair)
Other MMR factors
119415243 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
119415243
NCBI-ProteinID:
XP_037538336
LinkDB
All DBs
Position
9:complement(45371916..45483612)
Genome browser
AA seq
1011 aa
AA seq
DB search
MQRSIASFFQPKSKDKEDNQKKTASKTEKKPVKSPLKVQNGAQEADSPIKKVAKRSRQIL
DSDEDEAPTVKEQAATKGHGDKEAKTETKDDEFKAVPTPLSPPPAPATPVTPATPSSSAS
PGTPSTPSSISPTGITKRKTARKMFPKRKLDESRSSSSESQKEETEVTEEQGQHNKRPRV
ESCVSSAGNTDEPMEEGAEEERVEKAATEANGPDEEVENKKKGEAEKAKKEEEQVEKKSS
DEKEKKAEGAGKKNEATEKTDDEKGPAVAKEEGVEKDTQDTGSPKSQTVGKKQKEAKEQK
DKEPAKKPPISSFFAPRKAAVKTGKTETNPEGEKKTNTEKKNLGQERKDKMGDSTSGPTD
FDPSRPNYHPLEHACWQQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPD
DLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAES
SRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAVNKKIDIIKGLFVACRFSEARYIVRS
LAGKLRIGLAEQSVLSALSQAVCLTPPGQAFPPAVIDAGKGMSSESRRAMIEEKSLILKQ
TYCEMPNYDAIIPVLLKEGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTC
EYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKTKKDSVVSCVLDTEAVAW
DREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRES
FTEVEGEFQFARSIDSNNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKL
KKDYLEGVGDTMDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDL
EQHYKFLKEHILPNPRAYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDPE
KGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGDKADPEDYY
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatcattttttcaacccaagagcaaagataaggaggacaatcag
aagaaaactgcaagtaaaacagaaaagaagcctgtcaagagccccctgaaggtgcagaac
ggtgctcaggaagcggattcacccatcaagaaggttgccaaacgcagccgtcaaatcctg
gacagcgacgaagacgaggctccgactgttaaagaacaagctgccaccaagggacacgga
gacaaagaagctaaaacggagacgaaggatgacgagtttaaagccgtccccaccccgctg
tctccaccaccagccccagctacacccgtaacccccgccaccccgtcctcttcggcttct
cctgggacccccagcactcccagttccatctccccgacggggatcaccaaacgcaagact
gcgaggaaaatgttccccaagaggaagctggacgagagcaggagcagcagcagcgagagt
cagaaagaggagactgaggtcacggaggaacagggtcagcataacaaacgacctcgtgtg
gagagctgtgtcagcagtgcagggaacaccgacgaacccatggaggagggagcagaggaa
gaaagggttgaaaaggcagcgaccgaggctaacggaccagatgaggaggtggagaacaaa
aagaaaggagaagcagagaaggccaagaaggaggaggagcaggtagaaaagaagagctcg
gatgagaaagaaaagaaagctgagggggcgggaaagaaaaatgaagcaacggagaagact
gatgatgagaaagggcccgccgttgccaaagaggagggggttgaaaaggacacgcaagac
acagggagcccgaaaagtcaaacggttggaaaaaagcagaaagaggcaaaggagcagaaa
gataaggagccggccaagaaacccccaatcagcagtttctttgctcccaggaaagcagca
gtgaagacgggcaaaacggagacgaaccctgagggagagaagaagacaaatacagaaaag
aagaacttggggcaggagcgtaaagacaaaatgggcgactcgacctcgggaccgacagac
ttcgatccttcccggccgaactaccacccgctggagcacgcctgctggcaacaaggccaa
aaagtgccgtacttggcagtggctcgcacttttgagaaaattgaagaggactctggcagg
ctgaggaacatcgagacgctgtcgaacctgcttcgctccgtgctgctgctctctccagat
gacctgctgtgctgcgtgtacctgtgtttgaaccagctgggccctgcctacctcgggatg
gagctcggcgtcggggaaacggtgctgatgaaagccgtcgctcaagcaaccgggcgacaa
ttggacaaaattaaagcggaagcgcaggagaagggagatttgggccttgtggccgagagc
tcccgtagcaaccagcgcatgatgttccagccggccagcctgactgcggggggcgtgttc
aggaaattgaaggaaattgccagcatgagtgggaactcggccgtgaataagaaaatcgac
atcatcaaaggcctctttgtggcatgccgcttttcagaggcccgctacattgtcaggtcc
ctggctgggaagctgaggattggcctcgctgaacaaagtgtgctttctgctctgagccaa
gcggtctgtttgaccccacctggacaagcttttcctcctgctgtgatcgacgcagggaag
ggtatgagctctgagagcaggcgggccatgatcgaagagaagagtctgattctgaaacaa
acctactgcgagatgcccaattatgacgccatcatccccgttttgctaaaagaaggcatt
gaccagctgcccaaacactgcaagctaactccaggcgtaccgctgagacccatgttggct
caccccaccaagggtgtaggcgaggtgatgaagaggtttgacgaggcggcattcacctgc
gagtacaaatacgacggggagcgggcacagattcacattctggagagcggtgaagttcgg
atattcagccgcaaccaggaagacaacaccagcaaataccccgatatcatctctcgcatt
cccaagacaaagaaggactctgtggtgtcttgtgttctggacaccgaggccgttgcatgg
gatcgtgagaagaaacagatccaacccttccaggtcctcaccacccggaaaagaaaggat
gtggatgcctcagagatcaaagtccaagtgtgtgtgtacgcctttgacctcctctatctc
aacggagagtctctggtgcgacagccgctgtgtcggcgtcgggagctgctgagagagagc
ttcaccgaggtggagggcgagtttcagtttgcccgttccatcgactccaacaacactgat
gccatcgcagagtttctggagcagtctgtccgagactcctgtgaaggcctgatggtgaag
actctggagaaagatgctacctacgagattgccaagcgctctcataattggctcaagctg
aagaaggattaccttgaaggagtgggggacaccatggatctttgtgtgatcggcgcctat
ctgggaaaaggcaaaaggacgggcacgtacggtggcttcctgctggcctgctacgatgaa
gaaaacgaggagtttcagtccgtctgcaagatcgggacgggctttaaggatgaagatctg
gagcagcattacaagtttttaaaggagcacattctgcctaacccgcgtgcctactaccgc
gtggaccaatcagcagagcccgacgtgtggctggacgccgttcaggtttgggaggtgaag
tgcgccgacctctcgctgtcacccgtctacaaggctgccatgggaatggtggatccagag
aagggcatttctctcaggttccctcgattcctccggatcagagatgacaagaagcctgag
gacgccacgactggagctcagatcgccgatttgtacaagaagcagcagcagattcagaat
caaggagacaaagcggacccagaggactactactga
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