Nematolebias whitei (Rio pearlfish): 119428973
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Entry
119428973 CDS
T08042
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119428973 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119428973 (lig4)
Enzymes [BR:
nwh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119428973 (lig4)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119428973 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119428973
NCBI-ProteinID:
XP_037552616
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All DBs
Position
23:4065409..4070998
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AA seq
837 aa
AA seq
DB search
MRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAPTTSQGEAGDFAS
MAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHLITQSSALEQKWLI
RMILKDMKLGISKETVLQVFHPDAADLYNVNTDLNKVCQKLHNPSVSLSEVSIELFSAFK
PMLAAVANIRNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRNAFEYTQQFGGSPL
EGSLTPYIHNVFKSHVVSCILDGEMMAYNPKADTFMQKGSKFDIKRLMDDSELQTCFCVF
DVLLVNNQKLGKESLKKRYETLQTVFTPVKGRLHLVPKTEGKRMQQVVSALNDAIDNREE
GIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLVIVGGYWGKGRRGGMMSHFLCAV
AEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPPASILCGTEKPEV
YIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMTLAELDQFRSKAS
GKLASRHLDINVDEPQKKKRKQPAKPKKVVGIIDHFKPQDLSGVSKETDMFEDVEFCILN
GTEDHPKAELEKGVARCGGVVVQNPGRDTYCVIAGMENMRVKNLISSNQHDVVWASWLLE
CLNQKEVVPWQPRHMIHMSPSTREHFAKEYDVYGDSYFADVDEQQLREVFGRIGNTERAA
VNAAQVEERYGWEDLSTSMFRPFKVYVDIFADISEPTSVVPASCLDIRALEVRYHGGTVV
RTLEEGVSHVIVEEETRLLDLRTLRRSFTKKFKIVRDSWVTDSIKAGYLLDDTNYLV
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcttattgtccccccttttgaacgagagcgaatggcgtatggcatcaaagaaagc
atgctcgctaagctctacatagatgttttaggcctgcccaaaaatggtccggaggccaat
aaactgctaaactaccgcgctccgaccacatcccaaggagaggcgggagactttgccagc
atggcatactttgtgctgaagaagcgatgcacaagccaaggaaacctcagcatcaaagag
gtcaatgactttctggactcggtggcaatcaacaatgctagcaagcaaaaggatcaagtg
aaaaagagcctgctccaccttatcactcagagctctgctcttgagcaaaagtggctcatt
agaatgattctgaaggacatgaaacttggcatcagcaaggaaaccgtcctccaagtcttc
cacccggatgccgccgatctatataatgtcaacacagacttgaacaaggtctgccagaaa
ctacacaacccttctgtgtctctaagtgaagtctccatcgaactcttctctgctttcaag
ccaatgttggcagcggtggctaacattcgcaacgtggagaagcagatgggcaacagccct
ttttacattgagacaaagctggacggggagcggattcagctgcacaaagatggggatgtg
tacaagtacttcagccggaacgcttttgaatacacgcaacagtttggaggctcaccgctg
gagggatcactgactccctatattcacaatgtcttcaaaagccacgtcgtaagctgtatc
ctggacggtgagatgatggcatacaacccgaaggcggacacgttcatgcagaaagggagc
aaatttgacatcaagaggctgatggacgactcggagctgcagacttgcttttgtgtgttt
gacgtcttgttagtgaacaaccagaagcttggcaaagaatcgctgaaaaagagatacgag
actctacagactgttttcacaccagtcaagggacggctgcatctggtgccgaagactgaa
ggcaaacgcatgcaacaggtggtcagtgctcttaacgatgccattgacaacagggaggaa
gggatcatggttaaggatcctttgtccatatacaaaccagataaacgtggggagggctgg
ctaaaaataaagccagaatatgtggatggcttgatggacgagctcgatctggtgattgtt
ggtggctactgggggaaagggagacgaggtggtatgatgtcacattttttatgtgcagta
gctgaagctccaaagcctggcgagaaaccatctgtattccacaccctctgtcgcattggc
tcaggatacactatgaaagaattgtatgacctcggtttgaaactcgccaagcactggaag
gtctatcgcaaaaacgacccaccagcgtccatcctgtgcgggacagagaaaccagaggtc
tacattgaaccctgcaactctgtcattattcaggtcaaggcggcagagatcgttggaagc
gacatgtataaaaccaactgcactctgcgcttccccagaattgagaagatccgtgacgac
aaggagtggcaccagtgcatgactctcgccgagctggatcagttccgcagcaaagcgtca
gggaaactggcctcgcggcaccttgatatcaacgtcgacgaaccgcagaagaagaagagg
aagcagccagccaaacccaagaaggtggtcggcatcatcgaccactttaagccgcaagac
ctgtcaggcgtttccaaggagactgatatgtttgaggatgtggaattctgtatcctgaat
ggcaccgaagatcatcccaaggctgagctggaaaaaggcgtggccaggtgtgggggtgtt
gtggttcagaaccccgggcgggacacttattgcgtgattgccggtatggagaacatgcgt
gtgaaaaacctgatctcatctaatcaacatgatgtggtttgggcctcctggctgctggag
tgcctgaaccagaaggaagtggtgccgtggcaacctcgccacatgatccacatgtctccg
tcgaccagggaacacttcgccaaggagtacgatgtctacggcgacagctacttcgccgac
gtggacgaacaacaactgcgcgaggtgttcggccgaattggcaacacagagagggcagcg
gtgaacgcggcgcaggtggaagagcgctatgggtgggaagacctctccacgagcatgttc
agaccctttaaggtttatgtggacatttttgccgacattagtgagccgacaagcgtcgta
cccgcttcctgtttggacattcgagcgctggaggtgcgctaccacggggggacggtggtg
cggacgttggaggaaggagtttcccacgtgattgtcgaggaggagacgagacttctggat
ctgagaactctgcggcgcagctttacaaagaagtttaagatcgttagggactcctgggtg
actgattcgatcaaagcagggtatctgttggatgataccaactacttggtttga
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