Nitrobacter winogradskyi: Nwi_0353
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Entry
Nwi_0353 CDS
T00276
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nwi
Nitrobacter winogradskyi
Pathway
nwi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nwi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Nwi_0353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwi03400
]
Nwi_0353
Enzymes [BR:
nwi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Nwi_0353
DNA repair and recombination proteins [BR:
nwi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Nwi_0353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABA03620
UniProt:
Q3SVS1
LinkDB
All DBs
Position
complement(394743..397484)
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AA seq
913 aa
AA seq
DB search
MPSRKLSTYRNKRDFSKTAEPSGGARIAPARQRRFVIQKHDATRLHYDFRLEYDGVFKSW
AVTRGPSLDPAVKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVAIWDRGYWYADDPAKGL
AKGDLKFALMGEKLRGEWVLVRMKNDRSGGKRTNWLLIKHRDDYARPGDGEDVLKQDRSV
ASNRTLEQIAEGKGKAPEPFMMTRRIAGSDAVWDSNKGVAARARARAERRPAKASAQPAS
TGKTTLKESRPQTARAHAIKSKMPDFAGLQLCEAATRPPSADSWVHEIKLDGYRIQMRIE
SGAVTLRTRKGLDWTDRFPAIAKAAAKLPDALIDGEIVALNANGDPDFPAMQAALAEGRT
DALVYFAFDLLFTEGEDLRPLPLLARKDQLRKLLGRSAKSNRATIRYVEHFDVDGEQMLA
TARESGLEGIISKRIDAAYRAGRRGSWLKTKSRPGHEVVIGGWKTTGDKFRSLMAGVHNG
DRLVYTGIVGTGYGRDTVKRIMPALKAAAASKSPFSGKNAPAGGRDVHWLKPELVAEIEF
AGWTDDGMVRQAAFKGLRADKPAREVTAEMPTRAAALKLDKARPKATRPGTRAAAAARSD
PTTSRQSRTSAARDRSTVMGVAISHPDKALWPDAGDKRPVTKHDLAAYMEAVGGWMIGHI
RGRPCSIVRAPDGIHSETFFQRHAMPGLSDLVTQAKVSDDRKPYLQIDRVEALAAVAQIG
GIELHPWNCAPDEYTVPGRLVFDLDPAPDVAFPDVIAAAREMRQRLEALKLESFCKTTGG
KGLHVVTPLAIGPKDGLNWKQAKMFAQAVCEQMAADAPDKYLINMSKKQREGKIFLDYLR
NDTKSTAVAPLSPRARPGATVSMPLNWAQVKTGLDPKRFTLRTAPDLLKKSKAWADYDSA
ARPLAAAIGRLVR
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
gtgccctcgcgaaaactgagcacctatcgcaacaagcgtgacttctcaaaaaccgccgag
cccagcggcggggcgcgcatcgcgcccgcaaggcagcggcgattcgtgattcagaagcac
gacgccacccgactgcattacgacttccgccttgagtatgatggggtcttcaaatcctgg
gcggtgacgcgcggtccctcgctcgatccggccgtgaagcggctggccgtcgaggtcgag
gatcatccgctcgactacggcgacttcgaaggcaccattccgaaaggccagtatggcggc
ggcaccgtggcgatctgggatcgcggctactggtacgccgacgatccggccaagggcctc
gccaagggcgacctcaaattcgcgctgatgggcgagaagctcagaggcgaatgggtgctg
gtgcgcatgaagaacgaccgcagcggcggaaagcgcaccaactggctgctgatcaagcac
cgcgacgattacgccaggccgggtgacggcgaggatgtgctgaaacaggatcgttcggtt
gcatcgaaccggacccttgaacagatcgccgaaggcaagggcaaggcgccggagcctttc
atgatgacccggcggatcgcgggttcggatgcggtttgggattcgaacaagggagtcgca
gcaagagcgcgcgccagggcagagaggcggccggcaaaggcgagcgcacaacccgcttca
accggcaagacgacgctgaaggaaagcagaccacaaaccgccagggctcacgcgatcaaa
agcaagatgccggacttcgcgggacttcagctttgcgaagcggcaacgcgcccgccgtcg
gcggatagctgggtgcatgagatcaaactcgacggctatcgcatccagatgcggatcgag
agcggcgcggtcacgctcagaacccgcaagggacttgactggaccgacaggtttccagcc
atcgcgaaggcggccgcgaagttgccggacgccctcatcgacggcgagatcgtcgcgctg
aacgccaatggcgatccggatttcccggcgatgcaggccgcgctggccgaaggcaggacg
gatgcgctggtgtacttcgcgttcgacctgctgtttacggaaggtgaggatctacgcccg
ctgccgctgctggcgcgcaaggaccagcttcgcaaattgctgggacgctctgcgaaatcg
aaccgcgcaacgatccgctatgtggagcatttcgacgtggacggcgaacagatgctggca
acggcgcgcgagtccggcctcgagggcatcatctccaaacgcatcgacgcggcctatcgc
gccggccgccgcggcagttggctcaagaccaagagccgccccggccatgaggtcgtgatc
ggcggctggaaaacaacaggcgacaaattccgctcgctgatggccggcgtccataacggc
gaccgcctcgtctataccggcatcgtcggcaccggctacggccgcgacaccgtgaaacgc
atcatgccggcgctgaaggcggcggccgcatcgaaaagtccgttctccggcaagaacgcg
ccggccggcggccgcgacgtccattggctgaagcccgaactcgtcgccgagatcgaattc
gccggctggaccgatgacggcatggtccggcaagccgccttcaagggactgcgcgcggac
aagccggcgcgcgaggtcacggcggagatgccgacccgtgcggcggccttaaagctcgac
aaggcgaggccgaaggccacacggcccggcacgagagccgccgccgccgcacgctctgac
ccgacgacatcgcggcagtctcgcacgtctgcggcgcgcgatcgctcgacggtgatgggc
gttgcgatctcgcatccggataaagcgctgtggccagacgcaggcgacaagcggccggtc
accaagcacgatcttgccgcctacatggaggccgtgggcggctggatgatcggccacatc
cgcggacggccgtgttcgatcgtgcgcgcgccggacggcatccacagtgagaccttcttc
cagcgccacgccatgccgggcctgtctgatctggtcacgcaggcgaaggtgtcagacgac
cggaagccttatctgcagatcgaccgcgtcgaggcgctggcggcggtggcgcagatcggc
ggcatcgaactgcatccgtggaattgcgcgccagacgaatatacggtgcctgggcggctg
gtcttcgacctcgaccccgcgccggatgtcgcatttcccgacgtgatcgccgcagcgagg
gaaatgaggcagcggctggaggcgctcaagctcgaaagcttctgcaagaccaccggcggc
aagggcctgcacgtcgtcacgccgcttgcaatcgggcccaaagacggattgaactggaag
caggccaaaatgttcgcccaggccgtctgcgaacaaatggccgctgacgcacccgacaag
tatctcatcaacatgtcgaagaagcagcgcgagggtaagatctttctcgattatcttcgc
aacgacaccaaatcgaccgcggtcgcgccgctgtcgccgcgcgcgcgtcccggcgctacc
gtatccatgccgctgaactgggcgcaggtaaaaaccggcctcgatccgaaacgcttcacg
ctccgcaccgcgcccgaccttctgaaaaagagcaaggcatgggcggactatgacagcgcc
gcgcgcccgctcgccgccgcgatcggcaggctggtgcgatga
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