Nitrosococcus wardiae: E3U44_13625
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Entry
E3U44_13625 CDS
T05933
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nwr
Nitrosococcus wardiae
Pathway
nwr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3U44_13625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwr03400
]
E3U44_13625
Enzymes [BR:
nwr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3U44_13625
DNA repair and recombination proteins [BR:
nwr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E3U44_13625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBQ55431
UniProt:
A0A4P7BZB6
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All DBs
Position
2866413..2869889
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AA seq
1158 aa
AA seq
DB search
MSSVLNLASLSPALPQQAGEHRYFGRLYGSSFGLVLATSARHHPGPILVITPDTVTANRL
EDELRFYCSGQETLPILHFPDWETLPYDTFSPHQDIISERLATLYQLPRLKHGVLIVPVS
TLMQRLAPREYLETHGLLVATGDHLHLESWRKQLEKGGYRCVSQVMEHGEFAVRGSLIDL
FPMGSRVPYRIDLFDNEVDSLRSFDPETQRSSEHIEQIRLLPAREFPLTEEAITQFRKNY
RSTFSGDPQRSLIYREVSEGTLPPGIEYYLPLFFDRTDALFDYLPENTLAVTLEGVHATA
NAFWKEINDRYEQRRHDLERPLLNPQQLYLQTGQVFAALKSLPRISLQPSELEEKAGHQN
FATETPPQLTINARASQPLETLNQFIENFQGRVLFAAETTGRRETLRELLKDSGIQPHFF
ENWETFLQGEKRFGITVAPLQQGLLLGKPQLAVIAEPQLFGEQAMQQRRRKGRSRDTDAV
VRDLVELSIGAPVVHEEHGVGRYLGLQTLEVGKVRTEFMALEYADGDKLYVPVSSLHLIS
RYTGASPEAAPLHKLGSGHWERAKRKARERVRDVAAELLAIYAQRAARKKPALPPPDSHY
AAFARAFPFEETPDQADAIEAVIADLTSDKPMDRLVCGDVGFGKTEVAMRAAFIASQSSK
QVAVLVPTTLLAQQHHQSFKDRFADWPVRVEVISRFRSRKEQEVVIRDIADGRVDIVIGT
HKLLQENIRFKDLGLVIIDEEHRFGVRQKERMKALRAEVDILTLTATPIPRTLHMSLSGL
RDLSIIATPPARRLAIKTFVRQWDDNLLREALLREIKRGGQIYFLHNEVESIDKMAQRVQ
SLFPEAKVGVAHGQMRERELEQVMLNFYHRRFNVLVCTTIIETGIDIPSANTIIIHRADK
FGLAQLYQLRGRVGRSHHRAYAYLIVPPRSVMTADAVKRLEAIESLEELGAGFTLATHDM
EIRGAGELLGKDQSGQMQEIGFSLYNDLLERAVNSLKSGQTLDLEQSAEHGPEVDLHAPA
LIPEDYLPDVHTRLVLYKRIATAKSYQELQELQVEMIDRFGLLPEATKTVFAIHELRLKA
NEIGIRKLEANAYGGRIYFRPEPNVDPMAIINLIQKQPSVYKLDGQEKLRFVQELPDAQA
RLEALDKLLKELSMKKAA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgttttaaatcttgcctctttatcgccggccttgccccaacaggcaggcgag
catcgctattttggtcgactttacggaagcagtttcggcctggtgttagcaaccagcgcc
cgtcatcacccggggccaatcctggtgattacgccagatacagtcacagcaaatcggctg
gaggatgaactccgcttctattgcagcggccaagaaactcttcccatccttcattttccc
gattgggagacgctcccctatgacaccttctccccccatcaagacattatctctgagcgt
ctagccaccctctaccaattaccccgattaaagcacggagtactgatcgtccccgtatcc
actttgatgcaacgccttgcgccccgggaatacctagaaacccatggcctgttggtagca
actggcgatcaccttcacttggaatcctggcgaaagcaactggaaaaggggggatatcgt
tgtgtttcccaggtgatggagcacggcgaattcgcggttcggggttctcttattgacctg
ttccctatgggcagcagggtgccctatcgaatcgacctctttgataatgaagtggacagc
ctccgcagcttcgacccggaaacccagcgttcctcggaacatatagaacagatccggcta
ttgccagcccgggaattccccttgacggaagaggctattactcagttccgaaaaaactat
cgcagcacctttagcggcgatccccaacgcagccttatttatcgcgaggtgagcgaaggg
actctccccccaggaattgagtattatctgccgctttttttcgaccgtaccgatgcccta
ttcgattatcttccagaaaacaccctggcggtcaccttagagggagtccacgcaacagct
aacgctttttggaaagaaatcaacgatcgctatgagcagcgtcgccatgatttagaacgt
cccctactcaacccccagcaactctaccttcaaacgggccaggtctttgccgctcttaaa
agtctaccccggatcagcctgcaaccctccgaactagaggaaaaggcaggtcatcaaaac
ttcgccaccgaaacccccccccaactcacgatcaatgctcgcgcctcccaacctctggaa
accctcaatcagtttatagaaaactttcaaggacgggtattatttgccgccgaaaccacg
gggcgccgagaaaccttgcgggagctgctcaaagacagcggaatccagcctcacttcttt
gaaaactgggaaacttttcttcagggcgagaaacgcttcgggatcactgtagcaccgcta
cagcagggcttgctactgggaaaaccacagcttgcagtaattgccgaacctcaattgttc
ggcgagcaagccatgcagcaacgccgtcgaaaaggacgtagccgggatacggatgcggta
gtccgagatctggtggagctttccatcggcgccccagtggtccacgaagaacacggtgtg
ggccgctatttagggttacagaccctggaagtggggaaagtccgcaccgaattcatggca
ctggaatacgccgatggggataaactctacgttcccgtctcctctcttcacctgattagc
cgttacaccggcgcctcccccgaagctgcacccttgcataaactgggttccggtcactgg
gaacgggccaaacgcaaggcccgggagcgggtccgagatgtggctgccgagctgctagct
atctatgcccagcgggcagcacggaaaaaacctgccctgccccctcccgattcccactat
gccgctttcgcccgagcctttccttttgaagaaactcccgatcaggccgacgctattgag
gcagtgattgctgatctaacttcagataagcccatggatcgtctcgtctgtggggatgtg
ggttttggtaaaaccgaagtagccatgcgggctgcctttatcgcctcccagtcaagcaaa
caagtggccgtgctcgtacccaccacgctcctagcccaacaacaccatcaaagctttaag
gaccgttttgccgattggccagtgcgggtagaggtcatatcccgcttccgctcccgcaaa
gagcaagaggttgtgatcagggacattgccgatggccgggtggatattgtgattggcacc
cataaactattgcaggaaaacatccgcttcaaggacctgggactggtgattatcgatgaa
gaacaccggtttggagtccgacaaaaagaacggatgaaggccttacgggccgaggtggat
atactcaccttaaccgcgacccctattcctcgaaccctacatatgtctctttcaggactc
cgggatctttctatcattgccaccccaccggcgcgccgcctggctattaaaacttttgtg
cggcagtgggatgacaacctcctccgagaggccttgctgcgggaaatcaaacgcggggga
caaatttattttctccataatgaagtggaaagcatcgataaaatggcccagagggttcaa
tccctctttcccgaggccaaagtgggtgtcgcccatggccaaatgcgggagcgggaactg
gaacaggtgatgctaaatttttaccaccggcgctttaatgtcctggtttgcaccactatc
atcgaaacggggattgatatccccagtgccaataccatcatcatccatcgggctgataaa
ttcggcctggcccaactttatcagttgcgtggacgggtgggacgctcccatcaccgagct
tatgcctatctgattgttccccctcgctcggttatgaccgcagatgcggtcaaacgccta
gaggccatcgagtccctggaagaactgggagctggttttaccttggccacccatgatatg
gagatccgaggagctggagaactgctgggtaaagaccaaagtgggcaaatgcaagagatc
ggttttagtctttacaatgacctgctggaacgggcggtcaatagcctgaaatccgggcaa
accttggatttggaacaatccgcagaacatggtccagaggttgacctccatgcccccgcc
ctcattccggaagattatcttcctgatgtgcatacccgcttagtgctctataaacggatc
gccaccgccaagagctatcaagaactgcaggagcttcaggtggagatgattgatcgcttt
ggcttattgccagaggccactaagaccgtatttgctatccatgaacttcgcctgaaggca
aatgaaattgggatccgcaaacttgaggcaaacgcctatggtggccggatctacttccga
ccagaacccaacgtggatcccatggcaatcattaacttgatacaaaagcaacctagcgtc
tataagctagatggccaggaaaaactccgttttgtccaagaactaccggatgcccaggca
cgcttagaagcactagacaaactgcttaaggagctatccatgaaaaaggcggcctaa
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integrated database retrieval system
