Nitrospina watsonii: NSPWAT_1560
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Entry
NSPWAT_1560 CDS
T08754
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nwt
Nitrospina watsonii
Pathway
nwt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NSPWAT_1560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwt03400
]
NSPWAT_1560 (mfd)
Enzymes [BR:
nwt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NSPWAT_1560 (mfd)
DNA repair and recombination proteins [BR:
nwt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NSPWAT_1560 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
ResIII
CarD_TRCF_RID
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAI2718419
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Position
NSPWAT:complement(1635889..1639290)
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AA seq
1133 aa
AA seq
DB search
MPATNGWDDFLHALDSMPPSLKIEGLSGAARAWFLVRLWKTRRQPLVVVTADQNSGEALL
GDLRFFLKHENLRQVPQFFPTWELLPYEPLSPLSEVSGERLDVLDRLGENKCPILVVPLE
AAMQFVMPRRILNNLTYPVKKGETVDRELLELCLVDNGFRRTKLVEEPGEFSSRGDILDL
YLPSALNPIRVEFFGDDVESIRYFDVTSQISVEEIDAFKILPVREICLTQKECEEGIGRI
IDHAGEHGVDRGKLNELLEKLRHLQTFSGIEFLSPFFYDHCESLFDHVPDNTRVILDEPD
ALAEKAERYEALIQEEYARCQDREEVAPSPDKLYLRADALFQAMRRRPHIELNTLKLSGE
DAHAFEIKSIPGFQGRFDGFADAACDWKNEGLEVTVVAPTKGHVRRVNELLLEKELSLPV
MTGQISAGFQYPEGGQVFVAEHEIFGRTHKHRYRRKPKSASFQRGFKDLKVGDLLVHVDY
GIGKYMGTRDLKTSIGGGEFMEILYGDDQKLYLPMDGLAYVQKYQGASETNPVLSQLGGA
QWKRQKKKIKESLREMAGDLLKIYAAREVAEGNTYSTDPVLMQEFSDSFEYVETDDQLKA
IDEIHEDMEKSKPMDRLICGDVGYGKTEVAMRAAFRAVLDKKQVAVLVPTTILAQQHLNT
FRERFQMYPVSIDMVSRFRTPREQKEVLRKLKEGKLDIIIGTHRLLSKDVQFHNLGLMII
DEEQRFGVKHKEQLKKLRSSLDILTLSATPIPRTLHFSLMGVRDLSVIETPPSDRLAIKT
YIRKFDEKTIRDAILREMDRGGQIYFVHNKVHSIHSMAALIKKIVPEVRIGIGHGQLHEH
MLEKVMQQFIEKEIDLLLCTSIVESGLDIPSANTILINRADQFGLAQLYQLRGRVGRYKH
QAYAYLLIPGTMAVSEDARKRLMALEEMSDLGAGFQMAARDMEIRGTGNMLGKNQSGHIS
TVGFDLYCKLLEETIREAQGEKLEEKVETEVDFQVRGYIAKDYIVDLNQRLEAYQRLQLV
DDLDGLTAIRKEWNDRFGAVPPETEKLLALMEVKIQCQRLHITKVQRSGEHVYLKIAPST
PLKSETLTSLLDLRLRLVSEYELSIKVDNAGWKQDIERVAEYLNEMVESLNEK
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgccggccaccaacggctgggatgactttttgcatgccttggactcgatgcccccttca
ttgaagatcgaggggttgagcggtgctgcgcgcgcctggtttctggtgcgtctctggaaa
acccggcggcaaccgctggtcgttgtgactgccgatcaaaacagcggcgaagcgttgctg
ggcgacctgcgtttctttttgaaacacgagaatctacggcaggtgccgcaatttttcccc
acctgggaactgctgccctacgaaccgttgtcgcccttgagtgaagtgtccggcgaacgt
ctcgatgtgttggacaggctgggtgagaacaaatgcccgatccttgtggtgccgctggag
gccgccatgcagttcgtcatgccgcggcgcattctgaacaacctgacgtatccggtgaag
aagggggagaccgtggaccgcgagcttttggaactgtgcctcgtggacaatgggttccgt
cgcacaaaattggtggaggagcccggcgagttcagttcgcgcggcgacattctggatttg
tatttgccatcggcgttgaacccgatccgggtcgagtttttcggcgacgatgtggaatcg
atccgctatttcgacgtcacctcacagatttcggtggaagaaatcgatgcgttcaaaatc
ctgccggtgcgcgaaatctgcctcacacaaaaagaatgtgaggagggcatcggccgtatt
atcgatcacgccggagagcacggggtggaccgcggcaagttgaacgagttgctggaaaaa
ctccgtcacctgcaaaccttttccggcatcgagttcctgtcacccttcttttacgatcac
tgcgaaagcttgttcgaccacgtgcccgataacacgcgggtcattctcgacgaaccggac
gccctggcggaaaaggccgaacgttacgaggcgttgattcaggaagagtacgcgcgctgt
caggatcgcgaagaagtggcgccgtcgcctgataaattgtacctgcgtgccgacgccctg
tttcaagccatgcggaggcgcccgcacattgagctcaacaccctgaagctttccggcgaa
gacgcgcatgcgttcgagatcaagtccatccccggattccagggaagatttgatggcttc
gccgacgctgcctgcgactggaagaacgaggggttggaagtcacggtggtggcgccgacc
aaggggcatgtgcgccgggtcaatgaactgttgctggaaaaggaactgagcctgccggtg
atgacgggacagatcagcgccgggttccagtaccccgaaggcggccaggtgtttgtggcc
gagcacgaaatcttcggtcgcacgcacaagcaccgctaccgccggaaacccaaatccgcc
agctttcaacgcggcttcaaagacctcaaggtgggcgatcttctggtgcacgtggactat
ggcatcggcaagtacatgggcacacgcgacttgaagaccagcatcggcggcggtgagttc
atggaaattctgtacggcgacgatcagaagttgtatctgccgatggacggcctcgcctac
gtgcaaaaataccagggcgcgagcgagaccaatccggtgctcagccagctggggggcgcg
cagtggaaacggcagaagaaaaagatcaaggagtcgctgcgcgaaatggcgggcgacctg
cttaaaatttatgccgcccgcgaggtggccgaaggcaacacgtattccaccgacccggtg
ctgatgcaggagttttccgacagttttgaatacgtcgaaaccgacgatcagttgaaagct
atcgatgaaatccatgaagacatggaaaagtcgaaaccgatggaccgcctgatctgcggc
gacgtcggctacggcaagacggaagtcgccatgcgcgccgccttccgcgccgtgctggac
aaaaaacaggtggcggtgctggtccccactaccattctggcacagcagcatttgaacacg
tttcgcgaacgttttcagatgtatccggtgagcatcgacatggtcagccgcttccgcacc
cctcgcgaacaaaaagaggtgttgcgcaaactcaaggaaggcaagctggacatcatcatc
ggcacgcatcgcctgttatcgaaagatgtgcaatttcacaatctcggattgatgatcatc
gacgaggaacagcggtttggcgtgaagcacaaggagcagttgaagaagctgcggtcctct
ctggatattctcacgttgtcggcgacgcccattccgcgcaccctgcatttttcattgatg
ggggtgcgcgacctcagcgtcatcgaaactccgcccagcgaccggttggcgatcaagacc
tacatccgtaagtttgatgagaaaaccatccgcgacgccattttgcgggagatggatcgc
ggcgggcagatctattttgtacacaataaggtccacagcattcattcgatggcggcgctg
atcaaaaaaatcgtgccggaagtgcgtatcggcatcggtcacggtcaattgcatgagcac
atgctggagaaggtcatgcagcagtttattgaaaaggaaatcgatctgctgctgtgcacg
tccattgtcgagtcggggctggacattccgtcggcgaacaccatcctcatcaaccgggcc
gaccagttcggccttgcccagttgtaccagctgcgcgggcgggtggggcgctacaagcac
caggcttacgcctacctgctgattcccggcaccatggcggtttcggaggacgcccgaaaa
cggctgatggcgctggaggaaatgagcgatctgggtgcgggtttccagatggcggcgcgg
gatatggaaatccgcggcaccggcaacatgctcggcaaaaaccagtccgggcacatttcc
accgttggcttcgatctctactgcaaactgctggaagaaacgatccgcgaggcgcagggg
gaaaagttagaggaaaaagtggaaaccgaagtcgatttccaggtgcgcggctacattgcc
aaggattacattgtcgatttgaatcagcgcctggaagcgtatcagcggttgcaactggtg
gatgatctggacgggttgacggcgatccgcaaagagtggaacgaccgtttcggcgcggtg
ccgccggaaaccgaaaaattgctggccctcatggaagtgaagattcagtgccagcgcctg
cacatcaccaaggtccagcgctccggcgagcatgtctatctcaagatcgcaccttcgaca
ccgttgaagtcggaaaccctgacctccctgctggatttgcgtctgcggctggtttccgaa
tacgagttgagcatcaaggtggacaacgcagggtggaagcaggacattgaacgcgtggcg
gagtacctgaacgaaatggtggagtccctgaatgagaaatga
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