Nocardia yamanashiensis: LTV02_27790
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Entry
LTV02_27790 CDS
T07935
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nya
Nocardia yamanashiensis
Pathway
nya03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LTV02_27790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nya03400
]
LTV02_27790
Enzymes [BR:
nya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LTV02_27790
DNA repair and recombination proteins [BR:
nya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LTV02_27790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UGT39841
LinkDB
All DBs
Position
complement(6014739..6017012)
Genome browser
AA seq
757 aa
AA seq
DB search
MGSRKDFGGIEVGLTNLDKVLYPATGTTKGEVIAYFTAIAPALLPHIAERPVTRKRWPNG
VDESSFFEKNLPDHAPKWLERREVQHSDRTVVYPLIDSVAGMAWLGQQAALELHVPQWRF
DGAEVGPITRLVFDLDPGPGAGLAQCAEVALILRDVVREVGLDAFPVTSGSKGIHVYVPL
DRKLGPNGASAVAKQVATNLQKLRPDLVTATMAKSARENKVFLDWSQNNPAKTTIAPYSL
RGRTEPWVAAPRSWAEIEQRKKLRHLRFDEVLKRWNADGDLLAGLDDPLPEPVPDKLNTY
RSMRDAARTPEPVPLAPPQDGPGDRFVVQEHHARRLHWDVRLERDGVLVSWAVPKGPPID
SHENRLAVHTEDHPLEYLTFHGSIPKGEYGGGEMTIWDTGTYETEKWRDDEVIVRFHGER
LDGRYALIQTNGNQWLMHLMKDQRGPNGHQPEGDGAQRAPKSDAPFPHGLKPMLATPGEV
ANLDPETWAFETKWDGFRLIAEIEDDAVVLRSRAGHVVTGKYPGLGALGEELSGHRVVLD
GEAVVFDDHGGANLGLLRADSARAVFVAFDVLYLDGTSLVRKRYEDRRRVLEALAAQAPS
LHVPPRLDGSGAEALRYSQEHGMEGVVAKRRDSVYLPGKRGQSWLKTRNWRTLSVVIGGY
RRSEVRQFASLLIGVPHEGELYYLGRVGTGFTEQEMSQLADQLRRLERRTSPFGNELTAE
ERKDAVWVTPRLTGTVRFMNWTEAGRLWHPAWIPASD
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgggttcccggaaggatttcgggggtatcgaggttgggctgaccaacctcgacaaggtg
ctgtatccggccaccgggaccaccaagggcgaggtcatcgcctatttcaccgccatcgca
ccggccctgctgccgcatatcgccgagcgcccggtgacccgcaaacgctggcccaacggg
gtcgacgaatcctccttcttcgaaaagaatctgcccgatcacgcgccgaaatggctggag
cggcgggaagttcagcattccgaccggaccgtcgtgtacccgctcatcgattcggtggcc
ggcatggcctggctgggccagcaggccgcgctggaactgcatgtgccgcaatggcgtttc
gacggcgcggaggtcgggccgatcacccggctggtgttcgacctggatcccggaccgggc
gcgggcctggcgcagtgcgcggaggtggcgctgatcctgcgcgatgtggtgcgcgaggtg
gggctggacgccttcccggtgaccagcggttccaaggggattcacgtctacgtgccgctg
gaccgcaaactcgggcccaacggcgcgtcggccgtcgccaagcaggtggccaccaatctg
cagaagctgcgcccggacctggtgaccgcgaccatggccaaatcggcgcgggagaacaag
gtcttcctggactggagccagaacaatccggccaagaccaccatcgcgccgtattcgctg
cgcgggcgcaccgaaccgtgggtggccgcgccgcgcagctgggccgagatagaacagcgg
aaaaagctgcggcacttgcgattcgacgaggtgctgaagcggtggaacgccgacggtgac
ctgctcgccggcctggatgatccgctgccggaaccggttccggacaagctgaacacctac
cggtccatgcgggatgccgcgcgcacgcccgaaccggtgcccctcgccccgccgcaggac
gggccgggggaccggttcgtggtgcaggaacaccatgcgcggcggctgcattgggatgtg
cggctggagcgcgacggggtgctggtgtcgtgggcggtgcccaagggtccgccgatcgac
tcgcacgagaaccgcctcgccgtgcacaccgaggaccatcccctcgagtacctgaccttc
cacggctccatccccaagggcgagtacggcggcggggagatgaccatctgggataccggc
acctacgagaccgagaagtggcgcgacgacgaggtcatcgtgcgcttccacggcgaacgc
ctggacggccggtacgcgctcatccagaccaatggcaaccagtggctcatgcacctgatg
aaggaccagcgcgggccgaacggccaccagccggaaggcgatggcgcgcaacgggctccg
aagtccgatgccccgttcccgcacggcctcaaacccatgctggccacgccgggcgaagtg
gcgaacctcgatccggagacctgggccttcgaaaccaaatgggacggcttccgtttgatc
gccgagatcgaggacgacgcggtggtgctgcgcagtcgcgccgggcacgtggtgaccggc
aagtacccgggtctcggtgcactgggggaggagctatcggggcaccgggtggtgctggac
ggcgaagcggtggtgttcgacgatcacggcggcgcgaatctcggcctgctgcgcgcggat
tcggcacgcgcggtcttcgtggcattcgacgtgctgtacctcgacggcacctcgctggtc
cgcaagcgctacgaggaccgccgccgcgtgctggaagcgctggccgcgcaggcgccgtcg
ctgcatgtgccgccgcgcctggacggttcgggcgcggaggcgctgcgctacagccaggaa
catggcatggagggtgtggtagccaaacgccgcgattcggtctatctacccggcaaacgc
ggccagtcctggctcaaaacccgcaattggcgcaccctgtcggtggtgatcggcggctat
cgccgttcggaggtcaggcaattcgcctccctgctgatcggtgtcccgcacgagggcgag
ctgtactacctgggccgggtcggcaccggcttcaccgaacaggagatgagccagctggcc
gatcagctgcgccgcctggaacgcaggaccagccccttcggcaacgagctcaccgccgag
gagcgcaaggacgccgtctgggtgacgccccgtctcaccggcacggtccgtttcatgaac
tggaccgaggccggacgcctgtggcatccggcctggatcccggcctcggactga
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