Niabella yanshanensis: U0035_16655
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Entry
U0035_16655 CDS
T09723
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nyn
Niabella yanshanensis
Pathway
nyn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U0035_16655 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nyn03400
]
U0035_16655 (mfd)
Enzymes [BR:
nyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U0035_16655 (mfd)
DNA repair and recombination proteins [BR:
nyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U0035_16655 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WQD40786
LinkDB
All DBs
Position
4012102..4015500
Genome browser
AA seq
1132 aa
AA seq
DB search
MSTDVLQNFYVDDTRCLQIAEGFSVSRPSETALTGLFGSSAPFVFAAAAGHAPEFNHVIV
LNESEDAAYFHNTLENITGALDIFYFPSSFKTRKNYRQLNASHVMLRTEALTKLASGANA
QPVRKKILVTYPEALFEKVVISKTLSENIIHIKAADTIDIGQLLLKLDQYGFVRSDFVYE
PGQYALRGGIFDIYSFGNEKPYRFELFGNEVDSIRIIDPETQLSERKLLSVSIIPNVDTQ
FGSEERVSLFDFLPANTAIWLQDQELCVERLKDHEEELQYFLEMYPAGQLAANSDDEKLL
KRDITPDDFITANSLADSLTERSVLHFGGNSYASKREFEFNTKSQPAFNRQFDLLIKDLK
DKERKQYNVYIFSENPKQLQRLQTIFDDLKAELVFNPVSVSIHQGFIDDDLKVVCYTDHE
IFQRYHKYRVKQAYNKSKAITLRTLRELQPGDYVTHIDHGVGVYSGLQKMDVNGKLQEAV
RLIYKDKDVLYVNINSLHKIAKYTGKDGSVPKVNKLGSDVWNRLKEKTKAKVKEIAFDLI
KLYAKRKAQQGFAHTPDNYLQNELEASFIYEDTPDQSKATADVKKDMESASPMDRLVCGD
VGFGKTEIAIRAAFKTCVDGKQAAVLVPTTILAFQHYKTFSERLKDFPVTVDFINRFKSA
KEKKETLEKLKAGKIDILIGTHGIIGKEVKFKDLGVLIVDEEQKFGVAHKEKIKTIRTTV
DCLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPIQTEVQVYNEDFVRDAVYFETERG
GQVFFIHNRVAGLAEMAALIQGLCPDLSVGYAHGQMEGHQLEEKILDFIDRKYDVLVCTN
IVESGVDIPNVNTIIVNNAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLPSDSRKR
LQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQSGFMAEIGFEMYQKILDESIRELKRT
EFKDLFKEEISKQDDFVHDCTIDTDLEILIPDEYVENITERLSLYQRLDNCENDQELEEM
HNELADRFGAVPPQVDDLFETVKCRKLAIELGFEKMSLKSETLRCHFINRPDSPYFESDI
FRKIIEYLQIKTNKARLKQTGKLFLLIADPIPSMKELHEFLKDMHSFVVTSS
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggatgtgttgcagaatttttacgttgatgatacccgctgtttacaaatagcg
gaggggttttctgtgtcccggccttccgaaacagcacttacaggactttttggtagttct
gctccctttgtatttgcggccgctgccggacatgctccggaatttaaccatgtgattgtt
ttaaatgaatcggaggacgctgcttattttcataatacgctggaaaacataacgggagcg
ctggacattttttattttccttcttcctttaaaacaaggaagaattaccggcagctgaat
gcctcgcatgtgatgctgagaaccgaggcactaaccaaactggcttccggcgccaatgca
cagcccgtaaggaagaagatcctggtgacttaccccgaggcgttatttgaaaaggttgta
atctccaaaacattatcggagaatatcattcatataaaagctgctgataccattgatatt
ggtcagttattattaaagctggatcaatacggttttgtacgtagcgattttgtatacgaa
cccggacaatacgctttgcgtggaggtattttcgatatttactcttttggtaacgaaaaa
ccttatcgtttcgagttgtttggtaacgaagtggattcaatccgtataatagatcccgaa
acccagttaagtgagcgtaagctcttatctgtatcgattatccctaacgttgatacccag
tttggttcagaagagagagtgtctcttttcgatttcctgcccgccaatacggcgatttgg
ctacaggatcaggaattgtgtgtagaacggttaaaggatcatgaagaggaattacaatac
tttttagagatgtatcctgcagggcagttagcagccaacagcgatgatgaaaagcttctg
aaaagagatatcactcccgatgattttataacagctaacagcctggcagactcactcaca
gaacggtccgttttgcatttcggtggcaatagctatgcatctaaacgggaatttgaattt
aatacaaaatcgcaacctgcttttaacaggcagttcgacctgttgatcaaggacctgaag
gacaaagaaagaaagcagtataatgtttatattttttcggagaaccccaagcagctgcaa
aggctgcaaaccatttttgatgacctgaaagctgagctggtttttaacccggtatcggtt
tctattcaccaggggtttattgatgatgatctgaaagtagtttgctataccgatcacgaa
atcttccaacgttatcataaatacagggttaaacaggcttataataagagtaaagccatt
accttacgaacgctacgtgagttgcagcctggtgattatgtaacgcatatcgatcatggg
gtgggcgtatatagtggcttgcaaaagatggacgtcaatggtaagctgcaggaggcagtg
cggttgatttacaaggataaggatgtcttgtatgttaacatcaactctcttcataaaata
gccaagtatacaggcaaagatggtagcgtgcccaaggtgaataaactgggcagtgatgta
tggaaccgtttgaaggaaaagaccaaggccaaggttaaggaaatagcattcgacctgatt
aagctatacgctaaacgcaaggcccagcaaggctttgcgcatacgcctgataattatttg
cagaacgagctggaagcgtcgtttatatatgaagatactcccgatcaaagtaaggcaacg
gctgatgtgaagaaagatatggagtctgcttcgcctatggatcgactggtttgtggagat
gtgggttttggtaaaacggaaatagccatccgtgctgcctttaaaacctgtgtagatggt
aaacaggcagcagtactggtgcctactactatccttgcctttcagcattataaaactttt
agcgagcgtttaaaagacttcccggtaacggtagactttatcaaccgctttaaaagtgcg
aaagagaaaaaagaaacgcttgagaaattaaaggcgggtaaaattgatatacttattggt
acccatggtattatagggaaagaagtaaagtttaaagacctcggagtactgatcgtggat
gaagagcagaagtttggtgtagcgcataaagaaaagatcaagaccatccgtaccacggtt
gattgtttaacattgacagcaactcccatacctcgtacgctgcaattttcgctgatgggt
gcaagggatctgagcattatcaatacacctccgcccaatcgccagccgatacaaaccgaa
gtacaggtatataacgaagattttgtacgggacgccgtgtattttgaaacagagcgtggc
gggcaggtatttttcatacataaccgtgtagcgggattagcagagatggcggctcttatc
caggggttgtgtccggatctttcagtaggatatgcacatggacagatggaaggccatcag
ctggaagaaaagatactggactttattgatcgtaaatatgatgtattggtgtgtaccaat
atcgtggaaagcggtgtagatatacccaacgtcaatacaatcattgttaataatgcgcat
cattttggcttaagcgatctgcatcagttacgcgggcgggtaggtcgtagcaataaaaaa
gcattttgctatctgctggccccgcctatgagtactctgccaagcgactcacgtaaacgc
ctgcaaacactggagcagcatagtgaactgggtagcggattccagatagcgatgcgtgac
ctggatatacgtggcgccgggaacctattgggtggggagcaaagtggttttatggccgag
atcggttttgaaatgtaccagaagattcttgatgaatcgatccgcgaattaaagcgtaca
gagtttaaagacctgtttaaggaagagatcagcaagcaggatgattttgtacatgactgt
accattgatactgatcttgagattctgataccagatgaatatgtagagaatattaccgaa
cgcctttcgttataccagcgcctggataattgtgaaaatgaccaggagctggaggaaatg
cataatgagctggcagatcgattcggagcagtacctccgcaggtagatgatttgtttgaa
acggtaaaatgccgcaaattggcaatagaattgggctttgagaaaatgagcctgaaaagt
gaaacgcttcgttgtcattttattaaccgtcccgactctccttattttgaatctgacatc
ttccggaaaattattgagtacctccagataaaaaccaacaaagccaggctcaaacaaacc
ggcaagttattcttattgatagctgatcctattccctccatgaaagagctgcatgagttt
ttaaaagatatgcattcttttgttgttacctcttcctaa
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