Neisseria zoodegmatis: SAMEA4504057_1759
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Entry
SAMEA4504057_1759 CDS
T06683
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nzo
Neisseria zoodegmatis
Pathway
nzo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4504057_1759 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nzo03400
]
SAMEA4504057_1759 (mfd)
Enzymes [BR:
nzo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4504057_1759 (mfd)
DNA repair and recombination proteins [BR:
nzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA4504057_1759 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SNU80246
LinkDB
All DBs
Position
1:complement(1902353..1905979)
Genome browser
AA seq
1208 aa
AA seq
DB search
MNHPIPTPAQKSRWLGLSRGSLPLMLTECLPEQPVKIILTQDVEQALRLQTAWQFFRPQD
NAVFLPDWETLPYERFSPHQDLVSERLSALWQMKNGQADVLVVPVATAMQKLAPVSFLLG
RTFWLKTGQTLDIDALRENLVEAGYSNVSNVIAAGEFAVRGGILDIFPMGAELPYRLDMF
DDEIDSIKTFDPDTQRTLAPVSEIRLLPAHEFPTDDDAQKIFRSRFREEIEGDYNAAAVY
KAVSNGHFGAGVEYYLPLFFENECATLFDYIGEEAVVVCLGDVRAEAARFWADVKTRYAM
AQGDDAYPPLHPQHLYLSEDQFAGRLKPYPQILPDFHGKQHQLPDVAVNRQSETPLAALH
GFQTAFEGRILLCAESAGRRETMLGFFAQHGLKPKSVDGWQAFLNSDAPLCIAVTQLAYG
FQLPSENAGGVSESAEPVGRILESDKTQSAQMSDTSIRPTAAHLSDGLSGSLSENVGQTH
EPDEVGRILESDKTQSAQISRPTTGLAVITESDLYQYVARSRTARRKKHAQVSDGLLRDL
AEINIGDPVVHEEHGIGRYMGLVSMDLGEGSTEMMLLEYANEAQLYVPVSQLHLISRYSG
HAYENVQLHRLGTAAWSKAKRKAAEKARDTAAELLNLYAQRAAQEGFKFQFNELDYQAFS
DGFGYEETEDQAAAIAAVLKDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAV
LAPTTLLVEQHAQNFSDRFADFPVKVAQLSRFNSSKETKATLAGMADGTVDIVIGTHKLV
QDDIQFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTLTATPIPRTLSMALEGLRDFS
LITTAPSRRLAVKTFVKPFSEASVREAVLRELKRGGQVFFLHNEVETIENMRERLQELLP
EARIGVAHGQLRERELEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTIIINRADKFGLA
QLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAISAADELGAGFTLAMQDLEIRGAG
EILGEGQSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHSPALLPESY
CPDIHERLVLYKRLATCETEAQINTVHEELVDRFGLPEQPVKTLIESHRIRLIAKEMGID
AIDATAEAVTLTFGKHHNIDPAQIILLMQSNKNYRMAGADKLRVSAVMEDVETRIQTVKT
VLKKLGKR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatcctatccccacccccgcccaaaaatcccgctggctcggcctttcgcgcggc
agcctgcctttgatgcttaccgaatgcctgcctgaacaacctgtaaaaatcattctcacg
caagatgtggagcaggctttgcggctgcaaaccgcgtggcagtttttccgcccgcaggat
aatgcggtgtttctgcccgattgggaaacgctgccctacgaacgtttttcgccgcatcag
gatttggtttcggagcggctttctgccttgtggcagatgaaaaacgggcaggccgacgtg
ttggtggtgccggtggccaccgccatgcagaagctcgcaccggtgtcgtttctgctcggg
cgcacgttttggctgaaaacggggcaaacgctcgatatcgacgcgttgcgtgaaaacttg
gtggaggccggttacagcaatgtttccaacgtgattgccgccggcgaatttgccgtgcgc
ggcggcattttggatatttttccgatgggcgcggaattgccgtaccgcctcgatatgttc
gacgatgaaatcgacagcatcaaaactttcgaccccgacacccagcgcacgcttgctccg
gtaagcgaaatccgcctgctgcccgcgcacgagttccccaccgatgacgacgcgcaaaaa
atcttccgcagccgtttccgcgaagaaatcgagggcgactacaacgccgccgccgtgtac
aaagccgtgagcaacggccatttcggtgcgggcgtggaatattatctgccgctgtttttt
gaaaatgaatgcgccacattgttcgactatatcggcgaagaagccgttgtcgtgtgtctc
ggcgacgtgcgcgccgaagctgcgcgcttttgggcggacgtgaaaacccgttatgcgatg
gcgcagggcgatgatgcttacccgcctttgcatccacagcatttgtatctcagcgaagac
cagtttgcaggccgtctgaaaccttatccgcaaatcctgcccgactttcacggcaagcag
caccaattgcccgatgtggccgtgaaccgccaatccgaaaccccgctcgccgccctgcac
ggctttcagacggcctttgagggcagaattctgttgtgtgccgaaagcgcaggccgccgc
gaaaccatgctcggcttttttgctcaacacggtttgaaaccgaaaagtgtggacggctgg
caggcatttttaaacagcgatgcgccgctgtgcattgccgtaacgcagttggcttatggg
tttcagctgccgtctgaaaacgcgggcggtgtttccgaatcggccgaacccgtaggtcgg
attcttgaatccgacaaaacacaatcagcgcaaatgtcggatacaagtatccgacctacg
gcagcccatctttcagacggcctttcaggtagcctgtctgaaaatgttggtcagacacac
gaaccggacgaagtaggtcggattctcgaatccgacaaaacacaatcggcacaaatatcg
cggcctacaaccggcctcgccgtcatcaccgaatccgacctctaccaatacgtcgcccgc
agccgcaccgcacgccgaaagaaacacgcccaagtttcagacggccttttgcgcgatttg
gccgaaatcaacatcggcgaccccgtggtacacgaagagcacggcatcggccgctatatg
ggcttggtcagcatggatttgggtgaaggcagcaccgaaatgatgctgctcgaatacgcc
aacgaagcccagctttatgtgcccgtgtcgcagctgcacctgatcagccgctattccggc
catgcctatgaaaacgtgcaactgcaccgcttgggcaccgccgcgtggagcaaagccaaa
cgcaaagccgccgaaaaagcccgcgacaccgccgccgaactgctcaatctctacgcccaa
cgtgccgcacaagaaggctttaaattccagtttaacgaattggactaccaagccttttca
gacggcttcggctacgaagaaaccgaagaccaagccgccgccatcgccgccgtactcaaa
gacctcacccaaggcaaaccgatggacaggctcgtgtgcggcgatgtcggcttcggcaaa
accgaagtcgccctgcgcgccgccttcgtggccgtaatgggcggcaaacaagtggccgtg
ctcgcccccaccacgctgttagtcgaacaacacgcacaaaatttcagcgaccgcttcgcc
gatttccccgttaaagtcgcccagctttcccgcttcaacagcagcaaagaaaccaaagcc
acgcttgccggcatggccgacggcaccgtcgatatcgttatcggcacgcacaaactcgtg
caagacgatattcaattcaaaaacttaggcttagtcatcatcgacgaagaacaccgcttc
ggcgtgcgccaaaaagagcaactcaaacgcctgcgcgccaacgtcgatatcctcaccctc
accgccacccccattccgcgcaccctcagcatggcgctcgaaggcttgcgcgatttctcg
ctcatcaccaccgcgcccagccgccgtttggccgttaaaaccttcgtcaaacccttcagc
gaagccagcgtgcgcgaagccgtgctgcgcgaactcaaacgcggcgggcaagtattcttt
ttgcacaacgaagtcgaaaccatcgaaaacatgcgcgaacgcctgcaagagttgctgccc
gaagcccgcatcggtgtcgcccacggccaattgcgcgagcgcgaactcgaacaagtgatg
cgcgacttcctgcaacaacgcttcaacctgctgctgtgttccaccatcatcgaaaccggc
atcgacatccccaacgccaacaccatcatcatcaaccgcgccgacaaattcggcctcgcc
caactgcaccaattgcgcgggcgcgtcggccgcagccaccaccaagcctacgcctacctg
cttacgcccgaatacatcaccaaagatgccgaaaaacgcctcgatgccatttccgccgcc
gacgaactcggcgcaggcttcacgctggccatgcaggatttggaaatccgcggcgcaggc
gaaatcctcggcgaggggcaaagcggcgaaatgatgcaggtcggctttaccctctacacc
gaaatgctcaaacaagccgtgcgcgacctcaaaaaaggccgacagcccgacctcgacgca
ccgctgggcgtaaccaccgaaatcaaactgcacagccccgcgctcttgcccgaaagctac
tgccccgacatccacgagcgcctcgttttatacaaacgtctcgccacctgcgaaaccgaa
gcccaaatcaacaccgtgcacgaagaactcgtcgaccgcttcggcctgcccgaacaaccc
gtcaaaaccctgatagaaagccaccgcatccgcctgattgccaaagaaatgggcatagac
gcaatcgatgccaccgccgaagcagttaccctcaccttcggcaaacaccacaacatcgac
cccgcgcagattatcctgctgatgcaaagcaacaaaaactaccgcatggccggcgcggac
aaattacgcgtaagcgcggtgatggaagatgtggaaacacggattcaaacggtgaagacg
gttttgaagaagttggggaaaagatag
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