Ornithorhynchus anatinus (platypus): 100078364
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Entry
100078364 CDS
T01045
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X4
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oaa
Ornithorhynchus anatinus (platypus)
Pathway
oaa03013
Nucleocytoplasmic transport
oaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100078364 (UPF1)
03015 mRNA surveillance pathway
100078364 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oaa03019
]
100078364 (UPF1)
Enzymes [BR:
oaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100078364 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100078364 (UPF1)
Messenger RNA biogenesis [BR:
oaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100078364 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100078364 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100078364
NCBI-ProteinID:
XP_001514946
Ensembl:
ENSOANG00000004568
UniProt:
F7E547
LinkDB
All DBs
Position
X1:114275157..114311574
Genome browser
AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGALGIVAGGPGV
AGVGGPPGQLDIQVNGPDGILQNGAVDNSVAKTSQLLAELNFEEDEEDAYYTKDLPVHAC
SYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLEC
YNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLV
KIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQ
NIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEIC
LRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRM
QSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVL
QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR
LCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAE
RELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDH
CQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQN
GVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA
GAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVR
ANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPL
NNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNLYFQTH
DQIGMISAGPSHVAAMNIPIPFNLMMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKN
RFGIPGPSTNIPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagttcgcagaccctcaccttcctcgacaccgaggag
gccgagctacttggagccgacacccagggatccgagttcgagttcactgacttcaccctt
cccagtcagacccagactccgcccggggcgctcgggatcgtcgccggcgggcccggtgtg
gcgggagtcggggggccgcccgggcaactcgatattcaggttaatgggcctgatggtatc
ctacagaatggtgctgtagataacagtgtagccaaaactagccaactgttggcagaactg
aactttgaggaagacgaagaagatgcctactacacaaaggatcttcctgtacatgcttgc
agttactgtggtatccatgacccagcttgtgtggtatactgcaacaccagcaagaagtgg
ttctgtaatggacgtggaaatacttctggcagccatattgtaaatcaccttgtaagagca
aaatgcaaggaggtgactctgcacaaggatgggcccctgggagaaactgttttggaatgt
tataactgtggctgtcgtaatgtgtttctccttggatttattcctgccaaggctgactca
gtagtcgtactgctgtgcaggcagccttgtgccagtcagagtagtttaaaggatatcaac
tgggacagctcacagtggcagccccttatccaagaccgttgctttctctcctggctggta
aagattccttctgaacaggagcaattaagagcccgtcagattacagctcagcaaattaac
aaattggaggagctctggaaggaaaatccctctgcaactttggaagatcttgaaaagcct
ggtgttgatgaagagccacaacatgtcctactgcgatatgaggatgcttaccaataccag
aatatatttggaccccttgtcaaacttgaggctgattatgataagaaactcaaagagtcc
cagacccaagataacatcacagtgagatgggacctgggcctcaacaagaagagaattgct
tacttcaccttgccgaagactgactctgatatgcgtcttatgcagggagatgagatatgc
ctgcgatataaaggagaccttgcacctctatggaaaggaattggtcacgttattaaagtc
cctgataattacggcgatgaaattgcaattgaattgaggagtagtgttggagcacctgta
gaagttactcataattttcaagtggattttgtgtggaagtctacttcatttgaccgaatg
cagagcgcattaaaaacatttgctgtggatgaaacctcagtgtctggctacatttaccac
aaactcttgggtcatgaagtggaggatgtgattattaaatgccagctgccaaaacgtttt
actgcccaaggacttcctgacctcaatcattctcaggtttatgcagtaaagactgttttg
cagcggcctctgagccttatccagggcccccctggaacaggaaaaaccgtaacatcagct
acaattgtctatcatttagctaggcaagggaacgggcctgtgctagtttgtgccccaagt
aacatagctgtggatcagttaactgagaagattcatcagaccgggctgaaagtggttcgt
ctgtgtgctaagagtcgtgaggcaattgactctccagtatctttcttggcattgcacaac
cagatccggaacatggatagtatgcctgagctccaaaaattgcaacagctgaaagatgaa
actggagaactgtcttcagctgatgaaaagcgatatcgtgcattgaaacgaacagcagag
cgagaattgcttatgaatgccgatgtgatctgctgcacgtgtgtgggagccggtgatccg
agacttgccaaaatgcagtttcgttccattttaattgatgaaagtacccaggctactgag
ccagagtgtatggtaccagttgttcttggagccaagcagttgatccttgtaggagatcat
tgccagctgggcccagtggtaatgtgcaagaaagctgcgaaggcagggttgtctcagtca
ctgtttgagaggcttgtggtgctggggatccgtcccatccgcctgcaagtgcagtatcgt
atgcatcctgctcttagcgcttttccatccaacattttctatgaaggatcacttcaaaat
ggcgttactgcagcggatcgtgtgaaaaagggatttgatttccagtggccccagcctgat
aagccaatgttcttctatgtgactcagggtcaggaagaaattgccagctcaggcacctcc
tatctgaacaggacggaagctgcaaatgtggagaaaataaccacaaagctattaaaagca
ggtgccaagccagatcaaattggtatcatcactccgtatgaaggtcagcgatcttacctg
gtgcagtacatgcagttcagtggctcgctgcatacaaagctctatcaggaagtggaaata
gcgagtgttgatgcattccagggtcgagaaaaggactttatcattctctcttgtgtaaga
gccaacgaacatcaaggaattggctttttaaatgatcccaggcgtctcaatgtggctctc
accagagcgagatatggagtaattattgttggcaacccaaaggccctgtccaagcagcca
ctgtggaatcacctattgaactactacaaggaacagaaagtgctggtagaggggcccctg
aacaacctccgcgagagcctaatgcagttcagcaagccccgcaaactcgtcaataccatc
aaccctggagctcgattcatgactacggccatgtatgatgctcgtgaagctattatccca
ggatctgtttacgatcggagtagtcaaggacgtccctcaaatctgtatttccaaacccat
gatcagattgggatgattagtgctggacccagccacgtcgctgctatgaacattcctatc
ccattcaaccttatgatgccaccgatgcctcctccaggttatttcggacaagctaatgga
ccagctgcaggccgggggacccccaaagggaagacaggccgtggcggacgccagaaaaat
cgttttggtattcccgggcctagtacgaatattccaaatagtcaagcaagccaggatgtg
gtatctcagccgttctcccagggtccgttgactcagggctatatttccatgagtcagcca
tcgcagatgagtcagccaggcctctcccaaccagaattatcacaggacagttaccttggt
gatgagtttaaatcacagatcgatgtggctctgtcacaggattctacataccagggtgaa
cgggcatatcagcacggcgtgactggactgtcacagtattag
DBGET
integrated database retrieval system
