Oxalobacter aliiformigenes: NB647_07960
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Entry
NB647_07960 CDS
T08749
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oal
Oxalobacter aliiformigenes
Pathway
oal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NB647_07960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oal03400
]
NB647_07960 (mfd)
Enzymes [BR:
oal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NB647_07960 (mfd)
DNA repair and recombination proteins [BR:
oal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NB647_07960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
AAA_30
DUF4217
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WAV90270
LinkDB
All DBs
Position
1719872..1723324
Genome browser
AA seq
1150 aa
AA seq
DB search
MPFDLKKFLPRPGQRFALPPLHGSADALVLAKAAHELKSRQQMLVTIVANASDARRLLEE
IPWFDSETDEPLRCHLLPDWETLPYDSFSPHQDLVSQRLATLYEVHNGRCDVLIVPASTA
LLRIAPPSFLAAHTFFFKQGETLDEEKLRAQLTIAGYNHVSQVMSPGEYSVRGGLIDLFP
MGSNLPYRIDLFGDTIETIRTFDADTQRSLYPVREIRMLPGREFPMDEQSRAFFRSRWRE
VFEGDPTLSVIYRDIASGIASAGIEYYLPLFFEETATLFHYLPENAIFALIGNTSETFQR
FWADTQSRYNFLKSDRERPLLPPEKLFLSSEDFFVLAQPFGRWVITSDDAPSELSAPIPD
VTVNRRADDPLASLRSYIERAGKRVLICAESPGRRETMQQLFNEYDLKVTACTGFADFIT
HTETVMFCVAPLQKGFALGYVFGDLAFVTETELYANSGRRTARRKTDANFHIESIVRDLS
ELKIGDPVVHAHHGIGRYRGLATVDLGEGETEFLHLQYAHDAKLYVPVSQLHVISRYAGT
SPEDAPLHTLGSGQWEKARQKAAQKIHDTAAELLDLYARRSMRKGFAFPLTKNDYEAFAD
SFGFEETPDQAAAIAAVMEDMTSDKPMDRLICGDVGFGKTEVALRAAFIAVMGGKQVALL
APTTLLAEQHAQTFRDRFADWPVRISELSRFRTQKQVNQTVQGLEDGSVDIVIGTHKLLS
KDVSFKRLGLVIIDEEHRFGVRQKEALKTIRAEVDVLTLTATPIPRTLGMALDGLRSFSI
IATAPQKRLAIKTFVRSENDSVIREACLRELKRGGQVYFLHNEVETIENRRIMLENLLPE
ARIGVAHGQMHERELEKVMRDFVAHRYNILLCTTIIETGIDVPNANTMVMHRADKFGLAQ
LHQLRGRIGRSHHQAYAYLLVNDIQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEIRGA
GEVLGEEQSGEMVEIGFQMYSDMLKEAVRAMKKGEEPDYDAPFTTTTEINLHTPALLPAD
YCPGVNERLSLYKRFANCETPEQVNDLQEELIDRFGKLPEAAQALVETHRLRLLAKTVGI
VKIDAHTEAAVMQFLPNPPIDAIRIIELIQKNKNIRLNGPEKLRITAKMPNLDARVAQIK
STIRSLTAKK
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgcccttcgatctcaagaaatttcttccccgtcccggacaacgtttcgccttgccgccc
ctgcatggttcggcagacgcgcttgtacttgcaaaagccgcgcatgaactgaaatcacga
cagcaaatgctggtcaccattgttgccaatgcctcggatgcccggcgtctccttgaagaa
attccctggttcgacagtgaaacggacgagccgctacgctgccatcttcttcccgactgg
gaaaccctgccatacgattccttttcccctcatcaggatctcgtttcccaacggctggcg
accctctacgaagtacacaacggacgttgcgatgttctcatcgttccggcatccaccgcc
ctgttgcgtatcgcaccgccttcctttctggctgcccacacgttctttttcaaacaggga
gaaaccctcgatgaagaaaagctgagagcgcaattgaccattgccggatacaatcatgtc
tcgcaagtcatgtcacccggcgaatattccgtccgtggcggactgatcgatctttttccc
atgggatcgaacctgccttaccgcatcgatctcttcggggatacgatcgaaaccatccgc
acgttcgacgctgacacccagcgttcgctctatccggtcagggaaatccgcatgttgccc
ggcagggaatttccaatggacgagcaatcgcgggcttttttcaggagccgatggcgtgaa
gtattcgaaggcgatccgactctttcagtcatttatcgtgatatcgccagtggtatcgcc
tcggccggtatcgaatattacctgccgcttttcttcgaggaaacggccacacttttccac
tatcttcccgaaaacgccattttcgcactcatcggcaataccagcgaaaccttccagcga
ttctgggccgatacgcagtcacggtataatttcctcaaatccgaccgggaacgaccgctg
ctgcccccggaaaaactgtttttaagcagcgaggactttttcgttctggcgcaacctttc
ggccggtgggtcatcacttctgacgacgccccatccgaactgtccgctccgattcccgat
gttaccgtgaaccgccgtgccgatgatccgcttgccagtctcagaagctacatcgaacgt
gcaggaaaacgtgtattgatctgtgccgaatcgccagggcgccgcgaaacgatgcagcag
cttttcaatgaatacgatctcaaggttacggcctgcacaggattcgccgatttcatcacg
catacggaaacggtcatgttctgcgttgccccgctccagaaaggttttgcgctcggctat
gttttcggtgatcttgcctttgtcacggaaacggaactgtatgcgaactcgggacgacgg
accgcccgcaggaaaaccgacgcgaatttccacatcgaatccattgtccgcgatctttcc
gaactgaaaatcggcgatccggttgtgcatgcccatcacggtatcggtcgttaccgcggt
ctggcaaccgtcgatctcggagaaggcgaaacggaattcctgcatttgcaatatgcacat
gacgccaaactgtacgttccggtttcccagctgcatgtgatttcgcgttacgccggtact
tcgcctgaagacgcgcctttgcacacgctcggatcgggccagtgggaaaaagcccgccag
aaagccgcacagaaaattcatgatactgccgcggaactgctggatttgtacgcacggcgt
tccatgcgaaaaggattcgcttttccattgacgaaaaacgactatgaagcctttgccgac
agcttcggattcgaggaaacccccgatcaggccgcggcgattgctgccgtcatggaagat
atgacatcggacaaaccgatggacagactgatatgtggtgacgtcggtttcggcaaaacc
gaagtggcgctgcgagccgctttcattgccgtcatgggcggaaaacaggttgcccttctg
gctcccactaccttgctggccgaacagcatgcccagacattcagggaccgtttcgccgac
tggccggtccgtatatccgaactttcccgcttccgtacacagaaacaggtgaaccagacc
gtccagggactggaagacggttcggtcgacatcgttatcggtacccacaagctcctgtca
aaagacgtatcgttcaaacgcctcggactggttatcatcgatgaggaacaccgcttcggt
gtccggcagaaagaagccctgaaaaccatccgtgccgaagtggatgttctgactctcaca
gccacaccgattccacgaacactcggtatggcactggatggtttgcgcagcttctcgatc
atcgccaccgctccccagaaacggctggccatcaagacttttgtccggtccgaaaacgat
tcggtcatacgtgaagcctgtctgcgcgaactcaaacgcggaggacaggtttacttcctg
cacaatgaagtggaaacgatcgagaaccgccgcatcatgctggaaaatctgctgcccgaa
gcccgtatcggtgttgcgcatggccagatgcatgaacgggaactggaaaaggtcatgcgg
gacttcgtggcacaccggtacaacattctgttgtgcaccacgatcatcgaaaccggtatc
gacgttccaaacgccaataccatggtcatgcatcgtgccgacaagttcggactggcgcaa
ttgcaccagttgcgtggccgtatcggacgttcccaccatcaggcctatgcctatctgctc
gtcaacgacatacagacactttcaaaacaggcacaacgccggctggaagccatccggcaa
atggaagaactgggcagcggtttctttctggccatgcatgatctcgaaatccggggagcc
ggcgaggtacttggagaagaacaatccggagaaatggtcgaaatcggtttccagatgtac
tccgacatgctgaaagaagcggtacgtgccatgaaaaaaggcgaggaacccgattatgac
gcgcctttcacaacgacaacggaaatcaatcttcacacacccgctctgttaccggccgac
tattgtcccggtgtgaatgaacgtttgtccctgtataaacgcttcgccaactgcgaaaca
cccgaacaggtcaatgacttgcaggaagagctgattgaccgattcggaaaactgccggaa
gcggcacaggctcttgtcgaaacccaccggctccgtctgctcgccaaaacggtcggtatc
gtcaaaatcgacgcccacacggaagctgccgtcatgcaattcctgccgaatcctcccatt
gatgccatacgtattatcgaactgattcagaaaaacaaaaacattcggctaaacggaccg
gaaaaattgagaatcaccgcaaaaatgccgaatctggacgcacgagtcgcccagatcaaa
tcgaccatccggtctctgaccgccaaaaaatag
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