Ovis aries (sheep): 101107598
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Entry
101107598 CDS
T03117
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oas
Ovis aries (sheep)
Pathway
oas03013
Nucleocytoplasmic transport
oas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oas00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101107598 (UPF1)
03015 mRNA surveillance pathway
101107598 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oas03019
]
101107598 (UPF1)
Enzymes [BR:
oas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101107598 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101107598 (UPF1)
Messenger RNA biogenesis [BR:
oas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101107598 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101107598 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101107598
NCBI-ProteinID:
XP_027825175
EnsemblRapid:
ENSOARG00020003352
LinkDB
All DBs
Position
5:complement(4152619..4185966)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgcgggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcaggttggtggccctgagggc
atcctgcagaacggggccgtggacgacagcgtggccaagaccagccagttgttggccgag
ttgaactttgaggaagatgaagaagatacctattacacaaaggatctccctgtacacgcc
tgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaacaccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaagtgcaaggaggtgaccctgcacaaggatgggcccctgggggagacggttctggag
tgctacaactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggccgac
tcggttgtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcccagtggcagcccctgatccaggaccggtgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcacggcagatcactgcccagcagatc
aacaagctggaggagctctggaaggagaacccttctgccaccttggaggacctggagaag
cccggagtggatgaggagccgcagcacgtcctcttgcgctacgaggatgcctaccagtac
cagaacatattcgggcctctggtcaagctggaggctgactacgacaagaagctgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctctggaaagggatcggccacgtcatcaaggtccctgataattatggtgatgagatt
gctattgagcttcggagcagtgtgggtgcccctgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcatttgacagaatgcagagcgcgctgaaaacctttgcc
gtggacgagacctccgtgtcgggctacatctaccataaactgctcggccacgaggtggag
gatgtgatcatcaagtgccagctgcccaagcgcttcacggcgcaggggctccccgacctc
aaccactctcaggtttacgccgtgaagactgtgctgcagagaccgctgagtctgatccag
ggcccaccgggcacaggaaagaccgtgacctcagccaccatcgtctaccacctggctcgg
caaggcaacgggcccgtgctggtctgtgctccaagcaacatagccgtggatcagctgact
gagaagatccaccagaccgggctgaaagtcgtgcggctctgtgccaagagccgcgaggcc
atagactccccggtgtccttcttggccctgcacaaccagatcaggaacatggacagcatg
ccagagctccagaagctgcagcagctgaaggatgagaccggggagctgtcgtcggcggac
gagaagcgttacagagccctgaagcgcactgccgagagggagctgctcatgaacgcagat
gtcatctgctgcacgtgtgtgggcgcaggagacccgaggctcgccaagatgcagttccgc
tctattttgatcgacgaaagcacgcaggccaccgagccagagtgcatggtgcctgtggtc
cttggagccaagcagctgatccttgtgggtgaccactgccagctgggccctgtggtgatg
tgcaagaaggcggccaaggccgggctgtcccagtcgctctttgagcgcctggtggtgctg
ggcatccgccccatccgcctccaggtccagtaccggatgcaccccgcgctcagcgccttc
ccatccaacatcttctacgagggctctctccagaacggcgttaccgcagcggatcgtgta
aagaaggggtttgactttcagtggccccaaccggataaaccaatgttcttctatgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctgaacaggacggaggctgca
aacgtggagaagatcaccacgaagctgctgaaggcgggcgccaagccagaccagatcggc
atcatcaccccctacgagggccagcgctcctatctggtgcagtacatgcagttcagcggc
tccctgcacaccaagctctaccaggaggtggagattgccagtgtggatgcgttccagggc
cgtgagaaggacttcatcatcctctcctgtgtgcgggccaatgagcaccaaggcattgga
tttttgaatgaccccaggcgcctcaacgtggccttgaccagagcacgatatggggtcatt
atcgtgggcaacccaaaggccctgtccaagcagccgttgtggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggagggacccctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgacg
acagccatgtatgatgcccgggaggccatcatcccagggtcggtctatgaccggagcagc
cagggccggccctcgaacatgtacttccagacccacgaccagatcggcatgatcagtgcc
ggccccagccacgtggctgccatgaacatccccattcccttcaacctggtcatgccgccc
atgccgccaccggggtattttggacaagctaacgggccagccgcaggccgaggcacccca
aaaggcaagactggtcgtggggggcgccagaagaaccgctttgggcttcctgggcccagt
cagacgaacctccccaacagccaggccagccaggatgtggcgtcccagcccttctcccag
ggcgccctgacccaaggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggtgatgagtttaagtcacagatc
gacgtggcgctgtcacaagactccacataccagggcgagcgggcgtaccagcacggtgga
gtgacggggctgtcccagtactag
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