Oreochromis aureus (blue tilapia): 116312506
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Entry
116312506 CDS
T07295
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
116312506
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oau04054
]
116312506
Enzymes [BR:
oau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116312506
Pattern recognition receptors [BR:
oau04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
116312506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
PhoH
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
116312506
NCBI-ProteinID:
XP_031585815
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All DBs
Position
LG4:complement(9169340..9174075)
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AA seq
679 aa
AA seq
DB search
MADFGLYTYQQEVVERALKRENIIIWLPTGGGKTRAAVYVAKKHLETTQNAKVMVLVNKV
HLVDQHYNKEFNPHLGLRYAVRKVSGESDEKDFFGLVVQDSDVVICTAQILYNALINKEE
ARHVELSDITLLIIDECHHTHKESVYNKVMRLYVEKKLKGEKPLPQILGLTASPGTGGAK
TLDKAVEHVLEICANLDSAIVSTKQYAPELKKVVPRPRKTFNIVNKRDRDPFGDHLKSMM
TIIHDYMDIPPDFKLRECGTQEYEADVVVLEQRGVRDNNRLLAQCALHLRQYNDALLIND
TLRMIDAYRSLEEYYSTKSTMAIDGTDFFLLGLFEENQVELRNLARDSRFENPKMDELQS
TLLKQFGSGVPSRGILFSKTRKSTHCLKDWVLKNRALKDAGIKADILTGAGNGITYMTQN
EQAETIRNFRMGSLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARARDSQ
YAVVAQAGGREHRRECINEYLEELTGKAIDRVQSMSHHEFYLKLSELQQKAIISSKIEES
CKTEKRRSNTASSIQFLCRNCFTPVASGSDIQLVDNMQYVNVSPDFKNHYKVAERVILER
SFEDWEPGCRIRCKKCNMEWGFEIKYKKHVLMPNLAIKNFALETPKGRITVKKWKDVPFT
VEDFDYEEYCQENFPDLFG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttggactatatacctaccagcaggaagtggttgaaagggcacttaaacga
gagaacatcataatttggttaccgactggaggtggaaagacccgtgctgcagtgtatgtg
gccaaaaaacacctggagaccacacaaaatgctaaagtgatggtcctcgtaaacaaggtt
catcttgttgaccaacactacaacaaagagtttaatcctcacctgggtctacgctatgct
gttaggaaagtgagcggagagagtgatgaaaaggacttttttggtttagtggtgcaagac
tcagatgtggtcatctgcacagcacagatcttgtacaacgctctgattaacaaggaggaa
gcaagacatgtcgagctctcagatattactctgctgataattgatgagtgccaccatact
cacaaggagtcagtctacaacaaagtaatgagactctatgtggagaaaaagttgaaggga
gaaaaaccactgccacagatcttgggcctcacagcatccccaggaacagggggagcaaag
accctggacaaggctgtggagcatgtactggagatttgtgccaacttggattcagccata
gtttcaactaaacagtatgctcctgaactgaagaaagtggtgcccagacccagaaaaacc
ttcaacattgtcaacaagagagatagagatccttttggtgatcatctgaagtcgatgatg
acgattatccacgattacatggatattcctccagatttcaaactgagagagtgtggaaca
caagaatatgaagcagatgtggtggttctggaacagcgaggagtacgagacaacaacaga
ctgcttgcacaatgtgcgttacacctcaggcagtacaatgatgccctcctcatcaatgac
accttgaggatgattgatgcttatcgttccctagaggagtattactccacaaagagcacc
atggccattgatgggacagacttcttcttgttgggactttttgaagagaatcaggtggag
ctaaggaaccttgctagggattctcgctttgagaacccaaagatggatgaacttcagagc
actctgttaaaacagtttggttcaggtgtcccatcaaggggaattctcttcagtaaaact
cgcaaaagcacccactgcctgaaagactgggtcctcaaaaacagggcattgaaagatgct
ggcatcaaggcagacatcctcactggtgctggtaatggcatcacctacatgacacagaat
gaacaggcagaaacaatcaggaatttccgtatgggttctctgaacctcctgatctccacc
agtgtggccgaagaaggtcttgatatacctgaatgcaacctggtggtgcgctacggactc
cttacaaatgagatcgcccagcagcaggccagtggacgtgcacgagcaagagacagtcag
tatgcagtcgtagcccaagcaggcgggcgtgaacatcgcagagagtgcatcaatgaatat
ctggaagagctgactggtaaagccattgaccgtgtacaaagtatgagtcaccacgagttt
tacttaaagttaagtgagcttcaacaaaaggcaattatttctagtaaaattgaagaaagc
tgcaaaacggagaagaggaggagtaatactgcttccagtatccagttcttgtgtcgaaac
tgttttacccctgtggcttctggcagtgacattcaacttgttgacaatatgcaatatgtc
aacgtcagccctgactttaagaatcactacaaagttgcagagcgtgtgattctagaaagg
agctttgaggactgggagcctgggtgtagaatcagatgcaaaaaatgcaacatggaatgg
ggattcgagataaagtacaaaaagcatgtcttaatgccaaatctagccattaagaacttt
gccctggaaacccccaaaggcaggataacagtaaagaaatggaaagatgtacctttcact
gttgaggacttcgactatgaagagtactgccaggaaaacttccctgacctctttggttga
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