Oreochromis aureus (blue tilapia): 116313853
Help
Entry
116313853 CDS
T07295
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03013
Nucleocytoplasmic transport
oau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116313853
03015 mRNA surveillance pathway
116313853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116313853
Enzymes [BR:
oau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116313853
5.6.2.5 RNA 5'-3' helicase
116313853
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116313853
mRNA cycle factors
Common to processing body (P body) and stress granule
116313853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
116313853
NCBI-ProteinID:
XP_031587541
Ensembl:
ENSOABG00000013609
LinkDB
All DBs
Position
LG3:80463392..80477474
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFL
ALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFXSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSAYDRSNGGRPSNMYFQTHDQIGMIGAGPGPMAAM
NIPIPFNLVMPPMAPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGASQGNGPNS
QASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
gcggagttgctcggagcggacacccagggctcggagtatgacttcaccgacttcaccctt
cccagtcagacgcaaactcaagggcagacacagagccagctggacagccaggtaaatggt
cctgatgagggtcttcacaacggtggagtggatgattccgtggccaaagccagccaactg
ttggccgagctgaactttgaggaggatgaagaggacacgtactacaccaaagacctaccc
ttgcacgcgtgcagctactgtggtatccacgatccagcgtgtgtggtatactgcaatacc
agcaagaagtggttctgtaatgggcgtggcaatacatctggcagccatattgtaaaccat
ttggtgagagccaagtgcaaagaagtgacactgcataaagatgggccgctgggcgaaacc
gtgctggagtgttacaactgcggctgtcgcaacgtctttctcctgggcttcatcccagct
aaggctgattctgtggtggtgctactctgcaggcagccctgtgccagccaaagcagcctg
aaggacatcaactgggacagctcgcagtggcagccgctgatccaggatcgatgctttctg
tcctggctggtgaagatcccgtcagaacaggagcagcttagagcccgtcagatcacggcc
cagcagatcaacaagttggaggaactctggaaggacaatcccactgccaccttggaagac
ctggagaaacctggagtagatgaggagccccagcatgtactgctgcgttacgaggatgct
tatcaataccaaaatatatttggccctttggtcaaattggaagctgactacgacaagaag
cttaaggagtcacagactcaagataatataacggttaggtgggatctggggctgaacaaa
aagcggattgcctatttcactcttcctaagacggattcagatatgcggctgatgcaaggt
gatgagatttgtctgcggtacaagggagacctggccccactgtggaagggcattggtcat
gtcatcaaggtcccagacaactatggagatgaaattgccattgagttgcggagcagtgtt
ggagcacctgtggaaatcccccacaactttcaggtggactttgtgtggaagtcaacttcc
tttgataggatgcaaagcgccctgaagacgtttgcggtggatgagacctcagtgtctggc
tacatttaccacaaactcctgggccatgaggtcgaggatgtcaccattaagtgccagctg
ccaaagcgcttcactgccccaggccttcctgacctcaatcactcacaggtgtatgccgtg
aagacggtgcttcagagacctcttagtctgatccaggggccacctggcactgggaagacc
gtcacctctgccacgattgtgtaccacttgtcccgacagggcaacggaccagttttggtg
tgtgctcccagtaacattgctgtggaccagctgactgagaagatcgataagactggactg
aaggttgtcaggctgtgtgccaagagcagggaggccatcgagtcccctgtgtctttcctt
gctttacacaaccagatcagcaacatggacagtatgccggagcttcagaaactacagcag
ctaaaagatgagactggtgagctgtcgtctgctgatgagaaacgctacagggctctgaaa
cgcactgctgagagggagctgctcatgaacgctgacgtaatctgctgcacttgtgtcgga
gctggagaccctcgtctggccaagatgcagttcngttcaatcctgatcgatgagagcacc
caagccactgagcctgagtgtatggtgcccgtggtgttgggagcaaagcagcttattctg
gtgggtgaccactgccagttgggtcctgtggtgatgtgtaagaaggcggctaaagcaggt
ctgtcgcagtccctgtttgagcgcctggtggtcctggggatccggccgatccgcctgcag
gtccagtaccgaatgcacccggctctcagtgccttcccctctaacattttctacgaggga
tccctgcagaatggcgtcactgcagctgaccgcatcaagaaaggctttgacttccagtgg
ccacaaccagacaagcccatgttcttttacgttactcaaggtcaggaggaaatcgccagc
tctggaacctcgtaccttaacaggactgaagctgcaaacgtggagaaaatcaccaccagg
ctgctgaaggcgggagccaaacccgatcagatcggcatcatcaccccatacgagggtcag
cgctcctacctggtccagtacatgcagtttagcggctccctgcacaccaaactctatcag
caagtggaaattgccagcgtggacgcctttcagggcagagagaaggacttcataatcctg
tcttgtgttcgagccaacgagcaccagggaatcggcttcctgaacgaccctcgccgtctc
aacgtggcgctgaccagggccaagtatggtgtgatcattgtgggcaaccccaaggcgctc
tccaagcagccactgtggaacaacctgctgaacaactacaaggagcaaaaggtcctcgtg
gagggccccctaaacaacctgagggagagcctcatgcagttcagcaagccccgcaaactg
gtcaacaccatcaaccctggaggacgttttatgagcactgcaatgtacgatgcccgtgag
gctctcatccctggttctgcatacgaccgcagcaatggtggacgtccatctaatatgtac
ttccaaacacatgaccagattgggatgattggtgcaggcccaggtcccatggctgctatg
aatattcctatacccttcaacttggtgatgccaccaatggctccacctagctatctaggt
cagaccaatggccctgctgcaggacgtggagcaatgaaaggtaagcctgggcgtggcggg
cggcagagggtccgtggttcagcacaccagggtgccagtcagggtaatggacccaacagt
caggccagccaggatggagcctcccaatccttctcccaggggccactgacacaaggctac
atctccatgagccagccctcacagatgagccaacctggcctctcccagccagagctctcc
caggacagctacctgggtgacgagttcaagtcccaaatcgacgtggctttgtcccaggac
tcgacctaccagggtgaacgtgcgtaccagcatggcggcgtgactggactgtcgcagtac
tga
DBGET
integrated database retrieval system
