Oreochromis aureus (blue tilapia): 116317559
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Entry
116317559 CDS
T07295
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03013
Nucleocytoplasmic transport
oau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116317559 (upf3b)
03015 mRNA surveillance pathway
116317559 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116317559 (upf3b)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116317559 (upf3b)
mRNA cycle factors
P-body specific factors
116317559 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
116317559
NCBI-ProteinID:
XP_031592224
Ensembl:
ENSOABG00000024109
LinkDB
All DBs
Position
LG2:17776763..17781779
Genome browser
AA seq
465 aa
AA seq
DB search
MKEDKENTRPKEKRVEIKYEDGEKTEKSKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EVDYLEFFSNDTSLYPHLFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTAKKRSKKKDAKCGTIVEDPDYKKFLEYYNGDDEKLTSTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRLREEKKEERRRRELERKRLRDEERRKWREEERRKRKEAEKMKKLEK
PQEKDKDQAKDEPKIKLLKKPERRDEGEPEKPKEKSKKPEKPNREDRSLGGSDHKRRQNI
EHKEDRGRKGDEDGRKEFRERDTDRDRDRDREREKERRQKERERLKRQDEERRRRREQQD
GDNSFKKREEEVKKDKALEKKKGENMPDSPHTEKPEKPAKDNKKEEGGKRERLRNKDRPA
IQLYQPGARSRNRAAGGGGGGGAESNSTDRKPDTEARKVAEKEDD
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaagaaaacactcgaccgaaggagaaaagggtggagataaagtatgaa
gatggagagaagacggagaagtccaaggaaaagaaggaggccatgacaaagattgtgatc
agacgactaccaccaagtctcaccaaagaggagctggaggagcaactgcaaccgctccca
gaggtggactatttggagttcttctctaacgacacgagcctttaccctcacctctttgca
agggcttacatcaacttcaaaaaccaagaggatatagtgctcttcagagatcgctttgat
ggatatgtattcattgacaacagaggtcaggagtatcctgccattgtggagtttgcacct
tttcaaaaaactgccaagaaaagaagcaaaaaaaaggatgcaaagtgtggaacaattgtc
gaagatccagattacaaaaagttccttgaatattacaacggggacgatgagaagctaacg
tctacacctgagaccctgttggaggagattgaagctaaatcaaaggaactcgttgcaaaa
aaaacaactcctctgctggacttcctgaagaataaacagagactcagggaggagaagaaa
gaagagcgaagaaggagggaactcgagcgcaaacgtctgcgtgatgaggagcgtcgtaag
tggagggaggaggagaggaggaaacgcaaagaggcagagaagatgaagaagctcgagaaa
ccgcaggagaaggacaaggaccaagctaaagacgagccaaagataaagctcctgaagaag
ccagagagaagagatgaaggtgaaccggagaagccaaaagagaagtccaagaaaccagag
aagccaaatagagaagacagatctttgggaggttctgatcataagagacgtcagaacatc
gagcacaaggaggatcgaggaaggaaaggggacgaagatgggcggaaggagttcagggag
cgcgacacggatcgagacagagaccgtgaccgagagcgggagaaggagcgtcggcagaaa
gagagggaacgcctcaagcgacaggatgaggagcgtcggagaagaagggaacaacaggat
ggagacaactccttcaagaagcgggaggaggaggttaaaaaagataaagccttggagaag
aagaagggtgaaaacatgccagactccccacacactgagaagccagagaagcctgctaaa
gacaacaagaaggaggagggtgggaaaagagagcggctacgaaataaggaccggcctgct
attcagctgtaccagccaggtgccagaagccgcaaccgtgctgcaggaggaggaggagga
ggaggagctgaatccaactccactgacagaaagccagataccgaggctaggaaagtggct
gagaaagaagacgactga
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