Osmia bicornis bicornis (red mason bee): 114880809
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Entry
114880809 CDS
T06109
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
obb
Osmia bicornis bicornis (red mason bee)
Pathway
obb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
obb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114880809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obb03400
]
114880809
Enzymes [BR:
obb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114880809
DNA repair and recombination proteins [BR:
obb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114880809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
DNA_ligase_IV
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
114880809
NCBI-ProteinID:
XP_029053050
LinkDB
All DBs
Position
Unknown
AA seq
890 aa
AA seq
DB search
MSLASKIEFKKLCNVFKETEKASSAKKVEVLEKFIQQCRNISLKLKAESPDMDVSLYPVM
RLILPHLERERGPHNLKEKSLASLYIRVFCLGKNSKHAKKLLQYKAPTRKKIAGCDFAGK
AYYILQNHLLRNSSNFTIEYINEFLDNISGESIQHKDEIFKMLLAKINPLEFKWITRIIL
KDLKLGIGTKKILQVFHPDANRSFEVSSNLHQVCDTLYDRQLRYHHNIKVFFHFKPMLLE
RCHIEDVEKLFDSNKEYFIQVKYDGERSQMHMKDGKYKYFTRQGYDITDNPSYGETSSLG
FMSGVFSRLLNPECKSIILDGELMGWHKERKSFGSKGMSFDVKKLSENSHHQPCFVAFDI
IMYNDTLLDNEPYAKRLQILKDAFKEEKGCLMLCKSTKISNSEELRKIFNESIQIKEEGI
VLKECNSKYKPNVRDGNGCYKIKAEYSDNLVQDVDLIILGGYYGEGKFMGLMKSFLMGVA
SPPEISGENPTKFFSVVSVSNGFSLETLKELWKMFEGKWHTERPQNVVPPRLQPPDKWIR
PVHSIIVTIRATEMTQSNDYPTGYSLRFPRVMKVRIDKPWYSVCTKDELLSLIKDTRPIQ
KLTKREVNYEDIEESPKQKRRKIKYRSPKIESKTMKFSNYDNCLTRLFDDKEIYVTNGDD
ELPKERIEEILLQHKAKVVQSPSKNNYCIIVGNPKTCRANNIIKSKRYDVVTLDWFRRVT
KEENWPSLQDFLPWDLISCRESTKQRLAQYYDDYYDSFTVNANKESLSRSFEKIEAMKIA
HELDCAQMKEIDEELFEDGISPYSNFRGIVGYFDDPSNGSKFEFHFMGGTIKETLDDSVT
HVFTSKDFINPELENLIEDKSRESLTVVKSEWIGKCFQQGAIIANTSYLI
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgtcattagcttctaaaattgaatttaagaaactgtgcaatgtctttaaagaaactgaa
aaagcatccagcgctaagaaggttgaggtgttagagaaatttatccaacaatgtcgtaat
atcagcctcaaattaaaagcggaatctccagacatggatgtttcactctatcctgtaatg
agattaatcttgcctcatcttgaacgtgaacgaggaccacacaatttaaaggaaaaatca
cttgccagtctttacattcgcgtgttttgtttgggtaaaaatagcaagcatgcaaagaaa
cttctgcaatacaaagcaccaacaaggaagaagattgctggatgtgattttgcaggaaaa
gcttattatattttacaaaatcatttactacgtaacagttctaatttcacaatagaatat
attaatgaatttcttgataatatatcaggtgaaagtattcaacataaggatgaaatattt
aagatgttattggcaaaaataaacccattagaatttaaatggataacacgaattattcta
aaagatttaaaacttggtattgggacaaagaaaatattacaagtctttcatcctgatgca
aatagatcgtttgaagtatcatctaatttgcatcaagtttgtgatacattatatgatcgt
caattgagatatcatcataatattaaagttttctttcatttcaaacctatgctgttggaa
agatgtcacattgaagatgtagagaaactttttgattcaaataaggagtattttatacaa
gttaaatatgatggtgaacgatctcaaatgcatatgaaagatggcaaatataaatatttt
acaagacaaggatatgatatcacagataatcctagttatggggaaactagttctttaggc
ttcatgagtggtgtatttagtcgactattaaatccagaatgcaaatcaatcattcttgat
ggtgaattgatgggttggcataaagaaaggaaatcgtttggttcaaaaggaatgagtttt
gatgttaagaagctttcagaaaatagtcatcatcagccatgttttgttgcttttgatatt
atcatgtataatgatactttacttgataatgaaccttatgcaaaaagattacagatttta
aaagatgcatttaaagaggaaaaaggatgtctaatgttgtgtaaatccactaaaatttct
aacagtgaggaattacgtaaaatatttaatgaaagtattcaaatcaaagaagaagggatt
gtattaaaagaatgtaacagtaaatataaaccaaatgtgcgcgatggtaatggttgttat
aaaataaaagctgagtactccgataatttggtgcaagatgtagatttaattattcttggt
ggttattatggtgaaggaaaatttatgggtttaatgaaaagctttttaatgggagtagcc
tcaccaccagaaatttctggtgagaatcctacgaaattcttttctgttgtatctgttagc
aacggtttttctctggaaacattgaaagaactttggaaaatgtttgaaggaaaatggcac
acagaacgtccacaaaatgtggtgcctcctaggcttcagccgccagataaatggattcgg
cctgttcattccattattgtgacaatacgagctacagagatgactcaaagtaatgattat
ccaacaggatatagtttacgatttcctagagttatgaaagttagaattgataaaccatgg
tacagtgtttgtactaaggacgaacttttatctttaattaaggatacacgaccaattcag
aaactaacaaaacgagaagtaaattacgaggacatagaagaatcccctaaacaaaaacga
cgcaaaataaaatatcgttcaccaaaaatcgaaagtaaaacaatgaaatttagcaattat
gacaattgtcttactcgactttttgatgataaagaaatttatgtgacaaatggagatgat
gaattacctaaggaacgtattgaagaaattcttttgcagcataaagcaaaggttgtgcaa
agcccgtcgaaaaataactattgtattattgttggcaatcctaaaacgtgcagagcaaac
aatatcataaagagtaaaaggtatgatgtagtgacattagattggttcagacgagttact
aaagaagaaaattggccatcattgcaagactttttaccatgggacttaatatcctgtcgt
gaatcgacaaagcaacgattagcacaatattatgatgattattacgatagctttactgta
aatgcgaacaaagagagtttgtcacgttcgtttgaaaaaattgaagcaatgaagatagcc
catgaacttgattgcgcgcaaatgaaagaaatagatgaagaattatttgaggatggcata
tcgccatattccaattttcgaggtatagtgggctactttgatgatccgtcaaatggatca
aagtttgagtttcattttatgggtggaacgattaaagaaaccctggacgattccgttaca
cacgtatttactagtaaagatttcataaatcctgaacttgaaaacttgatcgaagataag
tcacgggaatcattaacagttgttaagagcgaatggattggaaaatgtttccaacaagga
gcaattattgctaatacgtcgtatttaatttag
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