Lacunisphaera limnophila: Verru16b_02403
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Entry
Verru16b_02403 CDS
T04567
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
obg
Lacunisphaera limnophila
Pathway
obg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Verru16b_02403 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obg03019
]
Verru16b_02403 (cshA)
03009 Ribosome biogenesis [BR:
obg03009
]
Verru16b_02403 (cshA)
Enzymes [BR:
obg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Verru16b_02403 (cshA)
Messenger RNA biogenesis [BR:
obg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Verru16b_02403 (cshA)
Ribosome biogenesis [BR:
obg03009
]
Prokaryotic type
rRNA helicases
Verru16b_02403 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOS45323
UniProt:
A0A1D8AWT6
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All DBs
Position
2846029..2847831
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AA seq
600 aa
AA seq
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MEKRPFSELGLSPEILKAVDKMGFEEASPIQTAVIPFGMAGRDVVGQSATGSGKTAAFAI
PAIEKVDVSLKKVQVLVLCPTRELAVQVAEEFGKLALFKKGLMEVPIYGGQSYDRQFRAL
AAGAQVVIGTPGRVMDHMERGTLRLDALKVIVLDEADRMLDMGFRDDIEHVLKSVPEQRQ
CLFFSATMPHAIQELIKRYTRDPEWIRIESLAQNAPQVEQIYFEVDRRSKIEVLTRLIDL
HDFRFGIIFCSTKIMVDELDEHLHARGYSTDRLHGDITQAQRTRVMDKFRRRGFEFLVAT
DVAARGLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGKKGMAFTFVSGREIYKLQGMIN
YARLKIRRERVPSLDEVEEAKGNVFYEKLRATLEEKKFKSHDQMVDRLLEQGHTSTDIAS
ALIHLMQGDVEEPAKKTAKVRAEHIAANESPAPSAPAPRPAPVRRDPPPAATPAPVAAAP
EGPASAAVRPVEAARPPSGDKFAAQKRTYERKPRTGREPGYSVVSFNIGRQHLVTPADLV
GKIAGVTRLPANVVGAIDINEDHTLVDVVSEHAELVVTKLAGIRIKNQSLKLAVVPPPAG
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgtccgttcagtgaactgggcctctcgcccgagattttgaaagccgtggac
aagatgggattcgaggaagcctcgcccatccagaccgcggtcatccccttcggcatggcc
gggcgcgacgtcgtgggccagtcggccacggggtcgggcaagacggcggcgtttgccatc
cccgcgatcgagaaggtcgacgtgtcgctcaagaaggtgcaggtgctcgtgctctgcccg
acccgcgagttggcggtgcaggtggccgaggaattcggcaagctggccctcttcaagaag
ggcctgatggaagtgccgatctacggcggccagagttatgaccggcagttccgcgcgctg
gcggcgggggcgcaggtcgtgatcggcacgccgggccgcgtcatggaccacatggagcgc
ggcacgctgcggctcgacgcgctgaaggtcatcgtgctggacgaggccgaccggatgctc
gacatgggtttccgtgacgacatcgagcacgtgctcaagtcggtgcccgagcagcgccag
tgtttgtttttctcggcgacgatgccgcacgccatccaggagctgatcaagcgctacacc
cgcgacccggagtggatccgcatcgagtccctggcgcagaacgccccgcaggtggagcag
atctattttgaagtggaccgccgttcgaagatcgaggtgctcacgcgcctgatcgacctg
cacgatttccgtttcggcatcattttctgcagcaccaagatcatggtggacgagctcgac
gagcacctgcacgcccgtgggtactcgaccgaccgcctgcacggcgacatcacgcaggcg
cagcgcacgcgggtgatggacaagttccgccgccgcggcttcgagttcctcgtcgcgacc
gacgtggccgcccgcggcctggatgtggacgacctcgaggtcgtgtttaatttcgacctg
cccaacgatgccgaggactacacgcaccgcattggccgcaccggccgtgcgggcaagaag
ggcatggccttcaccttcgtgtcgggccgcgagatctacaagttgcagggcatgatcaac
tacgctcggctgaagattcggcgcgaacgcgtgccgtcactcgacgaggtcgaggaggcc
aagggcaacgtgttctacgagaaactccgcgccacgctggaggagaagaaattcaagtcg
cacgaccagatggtggaccgcctgctggagcaggggcacaccagcacggacattgcctcg
gcgctgatccatctcatgcagggtgacgtcgaggagccggccaagaagacggccaaggtt
cgcgcggagcacatcgcggccaacgagagcccggcgccgtcggcgccggccccgcgtccg
gctcccgtccgccgtgatccgccgcccgcggcgacgcccgcccctgtggccgcggctccc
gagggcccggcgtccgccgcggtgcgtccggtcgaagcggcccgtccgccctccggcgac
aagttcgccgcgcagaaacggacttatgagcgcaagccgcgcaccgggcgcgagccgggt
tactcggtcgtttccttcaatatcggccgtcagcatctggtgacccccgccgatctggtc
ggcaagatcgccggcgtcacgcgcctgccggcgaacgtcgtgggggcgatcgacattaac
gaggaccacaccctcgtggatgtggtgagcgagcacgccgagctggtcgtgaccaagctg
gccggcatccggatcaagaaccagtccttgaagctggctgtcgtgccaccgccggcgggg
tga
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