Octopus bimaculoides (California two-spot octopus): 106870923
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Entry
106870923 CDS
T04127
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106870923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obi03400
]
106870923
Enzymes [BR:
obi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106870923
DNA repair and recombination proteins [BR:
obi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106870923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
DNA_ligase_IV
LIG3_BRCT
DUF1128
Motif
Other DBs
NCBI-GeneID:
106870923
NCBI-ProteinID:
XP_014772644
EnsemblRapid:
LOC106870923
UniProt:
A0A0L8HFN8
LinkDB
All DBs
Position
3:134436058..134458340
Genome browser
AA seq
837 aa
AA seq
DB search
MRLLLPHLENERVAYGIKEHTFAKLLIKVLCLGKNSPDASKLLNFNTKREANNDFASVAY
YVLKNRCPKNGNLSISDVNKCLDDIAVSNTSKKHDVVHETMLHLLRNMTAIEQKWLIRMV
MKELKIGLSQASIFGIFHPDAEEMFNVNNNLEKVCLQLSDPNVRSHEIAISLFTPFSPML
GETAHPNKISEVLSGKPYLIETKFDGERIQLHKQNDDYSYFSRNGHNYSKTFGASAFQGT
ITQYIHQSFLPGVHSCILDGEMLGYNSDTDKFGTKANHYDIKSADSGDYNPCFIVFDILL
HNDKVLTNLPITERLPYIRETLAPISGRIQISHYTQGVSKADCIEALNKAIDDREEGIMI
KDCESVYRPKARREGWFKVKPEYVDGLMDQFDLLIIGGYRGTGHRSGLMSHFLLALAKTP
KDGGKPNIFHSFCKVGSGYTKNELTELNEKLYKHWKKSDENPPKSIVLPPGFKEKPSVWI
EPSKSCIVQVKAAEIVSSDKFQTGCTLRFPRVEKIRDDKSWFECMTTRDLEDLKQKSGGK
LSNKLYESMDDTTPVKKKRTVAPKVEKKGVMERFKPSDTSHVKMVHNIFHQKDICVVNGP
KPYDKAKLEKLVVQYGGQIVQNPDSQTYCVLADKKTYQVNHYIKSNIYNIINVSWFLNCI
ENRKLLPWTPKNIIHATEATIAKIREDFDEYGDNYTDHSTYEDLKDVFSKIKLTKYLSPE
EITEIEDEYFPMESPYGLFRLCKVYVDNKLDPNDDNYLQHSPLTLLALEMRYFGATVLPV
LDNSVSHLIMDKNHLERLDMFKYKRCQSEKKFHILNSEWVKECIREGCLCPEQLFLL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttttacttcctcacctggaaaatgaacgtgttgcatatggaatcaaagaacat
acatttgcaaaacttttaattaaagtattatgtcttgggaaaaacagtccagatgcttcc
aaacttctaaattttaataccaaaagagaagctaacaatgattttgccagtgtagcctac
tatgtgctgaagaaccgttgtcccaaaaatggtaacctgagtatctcagatgtgaacaaa
tgtttagatgatatcgcagtgtccaatactagcaagaaacatgatgttgtacatgaaaca
atgcttcaccttttgcgcaacatgactgccattgaacagaagtggttgatccgcatggta
atgaaggaactaaaaattggtttgagtcaagcttccatatttggtatatttcaccctgat
gctgaagagatgtttaatgtgaacaataatcttgaaaaggtctgtttacaactatcagat
cctaacgtcagatctcatgagattgccatttctttatttactccattttcaccaatgtta
ggagaaactgctcacccaaacaagatttctgaagtattgtctgggaagccctatttgatt
gagactaaatttgatggtgaaaggatacagcttcacaaacaaaatgatgactatagttac
ttctctcgaaatggacataattattcaaaaacatttggagcatctgcctttcaaggtacc
attacacaatacattcatcagagctttcttcctggtgtccattcctgcatcttagatgga
gaaatgcttggatacaactcagacactgacaagtttggaaccaaagccaatcattatgat
atcaaatcagctgacagtggtgattacaacccttgtttcatagtctttgatattctattg
cataacgataaagtcttgacaaatttaccaatcacagagcgcctaccgtacatacgagag
acccttgcacccatcagtggtagaatacagattagtcactatacacaaggtgtatctaag
gctgactgcattgaagccttgaacaaggcaatcgatgaccgagaagaaggaataatgata
aaggactgtgaatcagtgtatcggcccaaagcccgacgagagggatggttcaaggtgaaa
ccagaatatgttgatggtttgatggatcaatttgacttactgattattggtggctacaga
ggcacaggacatcggtcaggactaatgtctcacttcctccttgctcttgcaaagacacct
aaagatggtggaaaaccaaatatatttcattctttctgtaaggttgggtcaggatataca
aaaaatgaattaactgaactcaatgaaaaattatacaaacactggaaaaagagtgatgaa
aacccacccaagtcaattgttttgccgcctggattcaaagagaaaccatctgtttggatt
gaaccttctaaatcatgtattgtgcaggtaaaggcagcagaaattgtatcaagtgacaag
tttcaaactggttgcaccctccgtttccctcgagtagagaagattcgtgatgataaatct
tggtttgaatgtatgacaactagggacttggaagacctgaaacagaaatcaggaggtaaa
ctgtccaacaaattatatgaaagtatggatgatacaacacctgtcaaaaagaagaggaca
gtggcacccaaggtagagaaaaaaggagtgatggagagattcaaaccttccgatacctct
catgtgaaaatggtacacaacatctttcatcaaaaggacatctgtgtagtgaatggtcca
aagccttatgacaaagctaaactagagaaacttgtagtgcagtacggaggacaaattgta
cagaacccagattcccagacatactgtgtgttggctgacaagaagacttaccaagtgaac
cattatatcaaaagtaacatttacaacatcattaatgtcagctggtttttaaattgcatt
gaaaatagaaagctgcttccttggactcccaaaaatatcatccatgctacagaggccaca
attgctaagataagagaagactttgatgagtatggagacaattatactgatcactcaaca
tatgaggacttgaaagatgtcttttctaaaataaaattgactaaatatctaagtcctgaa
gagattacagaaatagaagatgaatatttcccaatggagtctccatatggattgttcagg
ttgtgcaaagtatatgtggacaacaaattggaccctaatgatgacaattaccttcagcat
tctccgttaacattgttggctttggaaatgaggtatttcggagccacagttctgccagta
ttggacaattcagtatcccacttgataatggacaaaaatcacctagagaggttggatatg
ttcaaatataaacggtgccaatcagaaaagaagttccacatccttaattcagaatgggtc
aaagaatgtataagagaaggttgtttatgtccagaacagttgtttttgctgtaa
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