Octopus bimaculoides (California two-spot octopus): 106879078
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Entry
106879078 CDS
T04127
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
obi04121
]
106879078
Enzymes [BR:
obi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106879078
Ubiquitin system [BR:
obi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
106879078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-rbx1
zf-C3HC4_3
Sina_ZnF
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
106879078
NCBI-ProteinID:
XP_052824329
EnsemblRapid:
LOC106879078
LinkDB
All DBs
Position
5:45725781..46493807
Genome browser
AA seq
1222 aa
AA seq
DB search
MGFEIEKFVSTVEDEKKCKLCSGVLENPLRTPCGHVFCSGCIVPWVIRNGSCPENCTPGV
FLRPENLEAVVPLQQLISDMQVKCEFADRGCPLIVPLTMMVNHSQSCGYRPLCCRNPGCS
SVVNARHLTSHELHECGSRTVGICDKGCDLELQQKSVDCHECVQALKSHIAEKEVRTGAL
EAEMRRLQAKFTKREKTLLEEIALLHSDVQIQALKFQQKLNLYRLQLNNISLLNNNNNNN
NNNNNNNNNNNNNNNNCKDNNNCKRYNNINFSNKCIGTKDYGIVTINSSSYCIGDSSSNN
GGDNTKEASSGISSISSSSSSSSSSSSSNSSSSSSSSGSSSGGGGGGCDTISSSCSSGSS
GCQSNYNSDQQQQQQKSQSEPKVTLLLQRDKGALGFNIMGGSNPEKSNKNASDGIVITRV
SEGGAASKRGLKPHDQILKVNGQDLSQSTHEEAVEAFRSAKEPIVVEVLRRANKAKMKSR
SPTMVSVGTQTEEEIFCSNESPPTPPPGFYAFNGSGLYQPSSRRPVAFSPSADMGLTDIE
MAHAYEFEDPYFDDDRAYDMEYEEVILHRDNNEKLGLTLCYGSLDDDMTDIFIGEVESES
IAAKDGRIHPGDQILQINGVELHGRNQAIKLFSESTLDICLLVARHQIQVTAWNRTQNLE
MDDGFMDEHNMVLDDILEEQHHEKMQFMAGMLNEVHMDEEGATTDTGMTENSCLKLEKDS
GVGRTDESTKNEESSEQENFDGESVCPASLQFGTEGEFRQRHESFTSTDQDYVSHEIPVD
VCDRFREVLEDRCGSPRKERSRKDSQGSINRELAMLDKEMKEIQMECQELVRAHMREQQK
IQLQQREMLRYEPQRSPRIVPRMGTRLEYIKHTGLTHEQAESSNNARKESNQTPKLIPQS
MITDKEKDPATTSAYNSGESCRSTPLTLELNQVSDDSDKGLRNSMLCLVPPAGRTSGSDT
EKQTQTPTKANDHSSDDSLKFKKNLSFTQNSSKVNHRSGNLKSCESMGESLQDIYMRYSD
VMYTNHANLEHTIAIQQKLFQQQLEQRSRIKGHSSSGGRGSDGQQGEACAGAQSSDGCQM
EWVVKRRPDGTRYITRRPIRNKMLKERAKKISEERAGMTTDDDAMSELKVGRYWPKEERK
KHIEKARDQKRKKELMMKAKMETLKEEDKKEVNILELSHRKMLKHKGKKVLDDFVTVQEM
LAHGSRVAEGKTYNPLLSVTTV
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgaaatagagaaattcgtatctacggtggaagacgaaaaaaaatgtaaactc
tgctcgggtgttttggaaaatcctcttcgcaccccgtgtggacatgtgttctgctctggg
tgtattgtaccgtgggtcattaggaacggttcatgtccggaaaactgtactccgggtgtt
tttttacgtccggaaaatctcgaagcggttgttccgttacaacaattgatatccgatatg
caggtaaagtgtgagtttgctgatcgtggttgtcctttgatagtaccgctaaccatgatg
gtaaaccattcgcaaagttgcggttaccgcccgctctgctgccgtaatccaggttgttcg
agcgtggttaacgcccgccatttaacctcacatgaattacacgaatgcgggagccgtacc
gtgggcatatgcgacaaagggtgcgaccttgagctgcaacagaaatcggtcgactgtcac
gaatgtgtgcaagccctgaagagccatattgccgagaaggaagtgagaactggtgcgctg
gaggctgagatgcgccggcttcaggccaaatttaccaaacgagagaaaacactgcttgaa
gaaattgccctgttacacagcgacgtacaaatacaagctttgaaattccagcagaaattg
aacctctatcgtctccagttgaataatatctcactattgaataacaataacaataataat
aataataataataacaacaacaacaacaacaacaacaacaacaacaactgcaaagacaat
aataactgcaagcgttataacaatatcaacttcagtaacaaatgtattggaactaaagac
tacggcatcgtcaccatcaacagcagcagctactgcatcggtgacagtagcagcaacaac
ggcggtgacaataccaaggaagctagcagtggaatcagtagtattagtagtagtagtagt
agtagtagcagcagcagtagtagtaatagtagtagtagtagtagtagtagcggcagtagt
agtggcggtggtggcggtggttgtgatactatcagcagtagttgtagtagtggtagtagt
ggttgtcaatctaactataacagtgaccaacaacaacaacaacaaaagagtcaatcggag
ccgaaagtgactctacttttacagagggacaaaggggctctcggatttaacataatgggc
ggctctaaccctgagaaaagtaacaagaatgcctcagacggtattgtcataacacgggtt
agcgaaggtggagctgccagcaagagaggactaaaacctcacgaccagatacttaaggta
aatggacaagatctttcacaatcgactcatgaagaagctgtcgaagcttttcgaagtgca
aaagaacccattgtggtagaagtactgaggagagcaaacaaggctaaaatgaaaagtcgg
tctccaacgatggtatccgttggaacacagaccgaggaggagattttctgcagcaatgag
agtcctcccactccaccacctggattttatgctttcaatggctctggattatatcaacca
tcttcacgacgtcccgtagccttttcaccaagtgctgatatgggattaacggatattgaa
atggctcatgcatatgaatttgaagacccttattttgatgatgatcgggcatatgatatg
gaatatgaggaagtaatccttcatcgagataataatgaaaagttgggcctaactctttgt
tatggatccttggacgatgacatgactgatatatttattggtgaggttgagagtgaaagt
attgctgccaaagatggtcgaatccaccctggggatcaaattctgcagatcaatggtgtt
gaacttcatggtcgaaaccaagcaattaaacttttttcagagtccacattggatatctgt
cttcttgttgctcgccatcaaatccaggtcactgcctggaatcgaactcagaatcttgag
atggatgatggatttatggatgagcacaacatggtgctggatgatattttagaggagcaa
catcacgaaaaaatgcagttcatggcaggaatgctcaatgaggttcatatggatgaagaa
ggtgctacaacagatacaggaatgacagaaaattcgtgcctgaagctggagaaagatagt
ggagtgggacgtactgatgaaagcacaaaaaatgaagaaagttcagagcaggaaaacttt
gacggggaaagtgtgtgtccagcaagtttgcaatttggtacagaaggagaatttcgacaa
cgtcatgaaagctttacttcaacagaccaagactatgtcagccatgaaatacctgttgat
gtatgtgacaggttccgagaagtgctagaggatcgctgtggcagtcctcgtaaagaaagg
agccgcaaggattcccagggtagtatcaaccgtgagttggccatgcttgataaagaaatg
aaagaaattcaaatggaatgccaagaacttgtccgtgcacatatgagagagcaacaaaaa
atacagcttcaacagagagaaatgttacgatatgaaccacaaaggagtccccgtattgta
cccagaatgggaacaagattggagtacataaagcatacaggtcttacccatgagcaagca
gagagcagtaataatgctcgcaaagaaagcaatcaaacccccaaactcattccccaatct
atgataactgataaagagaaggacccagctacgactagtgcctataattcaggtgagagc
tgtcgtagcacaccgttgaccctcgagttgaaccaggtgtcagacgacagcgataaagga
ctgcgtaactctatgttgtgtcttgtgccaccagctggccgaacgtcaggtagcgacaca
gaaaagcagacacagacacccactaaagccaatgatcattcaagcgatgacagtctgaaa
tttaaaaagaatttatcttttacccaaaattcgtccaaagtcaatcataggtcaggtaac
ctaaaaagttgcgaaagcatgggggagtcattacaagacatttatatgcgttactctgat
gtcatgtacactaaccatgccaatttggaacatactattgctattcaacagaaacttttc
caacagcagctggagcaacgctctcgcataaaaggtcatagcagcagcgggggtcgcggt
tccgatggtcagcagggtgaggcttgtgctggtgcacaatcatctgatggctgccaaatg
gaatgggtggtgaagcgtcggccagatggtactcgttacataacacggcgtccaattcgc
aataagatgttgaaagaacgggctaaaaagatttcagaagagcgtgcaggcatgacaaca
gatgatgatgcaatgagcgaattaaaagttgggcgttactggccgaaagaggaacgtaag
aaacacattgagaaagcacgtgatcagaaacgtaagaaagaattgatgatgaaagccaaa
atggaaaccttaaaggaagaagacaaaaaagaggtgaacattctagaattgagtcataga
aaaatgttaaaacataaaggcaaaaaagtgctagatgattttgtaactgtacaggagatg
ttagcccatggcagccgagtagctgaaggcaaaacctacaatcctttactctcagtaaca
actgtgtga
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integrated database retrieval system
