Octopus bimaculoides (California two-spot octopus): 106879324
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Entry
106879324 CDS
T04127
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03022
Basal transcription factors
obi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106879324
09124 Replication and repair
03420 Nucleotide excision repair
106879324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obi03021
]
106879324
03400 DNA repair and recombination proteins [BR:
obi03400
]
106879324
Transcription machinery [BR:
obi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106879324
DNA repair and recombination proteins [BR:
obi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106879324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Phage_30_8
TraY
Motif
Other DBs
NCBI-GeneID:
106879324
NCBI-ProteinID:
XP_014784318
EnsemblRapid:
LOC106879324
UniProt:
A0A0L8G4D3
LinkDB
All DBs
Position
1:184224863..184243844
Genome browser
AA seq
455 aa
AA seq
DB search
MSATLESGKLECKDLYGYLRTLPANVLDKLYNHPATCLAVFRELPELAKHCVMRILFVEQ
PVPQAVVAHWVANKHHEEQKQAMTAVTDLRVWHEQPLPGGMMGFILNQTFRMNMKTALLG
GGQPWTGGGSLPPDKHVKDIAFLDNYAQDRWECVLHFMVGSSDCVSRDIKWVLLHAGLMK
AESEDQAPVITPNGFQFLLMDTSSQVWFFMLQYLNTLATRGMDLVESLSFLFQLSFSIFG
KDYTTEGMSEAQLRLLQHLREFGLVYQRKRKSQRYYPTKLAINLAAGLSQVSDNAIRQGF
IVVETNYRVYAYTDSQLQIALLALFTEMIYRFPNMVVGQITRDSVRSALSCGISADQIIH
FLKSHAHEKMLEKMPVIPPTVTDQIHLWELERDRFKFTDGVLYNQFLSQSDFELLRDYAR
DLGVLVWDKPSKRVMVVARNGHDEVKRFWKRQKHS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaacattagaatcaggcaaattggaatgtaaagatttatacgggtatcttaga
actttgcctgcaaatgttctcgataaactctataatcatccggcaacatgtcttgctgta
ttcagggaattaccagaacttgccaaacactgtgtaatgagaatactttttgtggaacaa
cctgtacctcaggctgttgtagcacattgggtggccaacaagcaccatgaagaacagaaa
caggcaatgactgctgtgacagatctgagagtttggcacgaacaacctcttccaggtggg
atgatggggtttatattgaaccagacattccgaatgaacatgaagacagctttgttagga
ggtggtcaaccatggacaggtggaggttcccttccaccagataagcacgtcaaagatatt
gcttttttggacaactacgctcaagacaggtgggaatgtgttcttcattttatggttggt
tcatcggactgtgtcagcagagatataaagtgggtcttactacacgcaggtctcatgaag
gctgagtcagaagatcaagctccagtgattacaccaaatggtttccaatttctactgatg
gacacatcttctcaagtctggttcttcatgttacaatacctcaatacactagcaacacgg
ggcatggatttagttgaatctttgtccttccttttccagctgagtttttcaatatttgga
aaggactacacaacagaaggaatgtctgaagcccagcttcgcctcttacaacatttacgg
gagtttggtttagtttatcaaagaaagagaaaatctcagagatattatccaacaaaactt
gctattaatctggctgcaggattatctcaggtttctgataatgcaatcagacaaggtttt
attgtagtagaaacaaattatcgggtctatgcttacacagactcacaactccagattgct
ttattagctttattcacagaaatgatttaccggtttccaaatatggttgtgggtcaaatt
accagagacagtgttcgatcagcgttaagctgtggtataagtgctgatcagataatccac
ttcttaaagagccatgcacatgagaaaatgctagaaaagatgccagttattccaccaaca
gttactgaccagatccacttgtgggagttggaaagagacagatttaaatttacagacgga
gtactctataatcagtttctctctcagagtgactttgaacttctccgcgattatgctcgg
gaccttggtgtattagtctgggacaaaccaagcaagcgagttatggttgtggctcgcaat
ggccacgatgaagtgaaacgcttttggaagagacaaaaacattcatga
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