Dysosmobacter welbionis: EIO64_11610
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Entry
EIO64_11610 CDS
T06030
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
obj
Dysosmobacter welbionis
Pathway
obj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EIO64_11610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obj03400
]
EIO64_11610 (mfd)
Enzymes [BR:
obj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EIO64_11610 (mfd)
DNA repair and recombination proteins [BR:
obj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EIO64_11610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Rhabdo_matrix
PSK_trans_fac
Motif
Other DBs
NCBI-ProteinID:
QCI59787
UniProt:
A0A4D7AZU1
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All DBs
Position
2259328..2262852
Genome browser
AA seq
1174 aa
AA seq
DB search
MEQFLRQLQTIPEAAELIRRVEEGGCPAAVSGLQPVQRACVGAAVAAACGRPAVFLCGDE
REVQVLSADLETLTGRRPVTLLGREWQFRPGAVGSRDWERSRLAALYALAQGDAPVVVAT
ADGLMARTLPPETLRSLAITLEVGGQAELGALAEQLLSAGYTRCEQVEGVGQFALRGGIL
DVFSPLMDQPVRCEFFDDEIDSMGAFDPGTQRRTRNVSSARILPAAEVLPHCAPGGLPGL
ADQLTALAEKLAKKQKTEAIVQTLREDAERLRSGAAPGAADRYLAAIYPTVTAGVHYLPP
DAVVFLSESGRVDERVKNTVLQQKQDVEALLSAGVLAGEYAHLTLTAEELYAALEDFPVI
LEDSLPTSRHPLRPRGLLTMNAKQLSSYGGSLETAVTDLEHYRSSGSAVLVLCGGETRAK
NLHRLLEEKGIPATLDLSGAAMPAAGEVRLSLGALSAGSEWPALKLAVLTEGQLTAPAMR
KRQRVKKDSNRQKLQSYTDLSPGDLVVHEHHGVGRFVGIQRMPVDGVEKDYIKIDYAGGD
CLYVPVTQLDLVSKYIGGGEDTERTKLNKLGGAEWTRQKTKAKKAAKDLARGLIALYAER
QKRPGFAFSPDSPWQREFEESFDYTETDDQLRCIAEIKADMEKPRPMDRLLCGDVGYGKT
EVALRAVMKCILDGKQAAILVPTTVLAQQHYATAVSRFRDFPVKIEVLSRFTPAREQKRI
LEAAKNGGVDLLIGTHKLLQKSMAFKDLGLLVIDEEQRFGVTHKERLKEMSRQVDVLTLS
ATPIPRTLNMALSGLRDMSTLEEPPADRQPVQTYVLEHDWAIIEDAVRRELGRGGQVYYL
HNRVESIDATAARLQKMLGPEVRIVTGHGKMTEQELSSVMQAMVDGEADILVCTTIIETG
IDIPNVNTLIIEDADKMGLAQLHQIRGRIGRSARRAYAYLTYRRGKVLQETAAKRLAAIR
EYVEFGSGFKIAMRDLEIRGAGNLLGPEQSGYLMSVGYDLYLKLLEEAVLEERGEEKRIE
TECAADLTVNAHIPDRYVPSAEQRMDLYRRIAAIRTDEDASDLLDEMLDRYGEAPKSVLA
LLDVALLRSAAAKAGVSDISQKGSLLRLQLGVFHPQALVAVCGHAKYRQRLTLAAGEIPA
LTLKLKPGEDVLEAARDLVEDLKLAAEEAAGGTP
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggaacagtttctgagacaattgcagactatccccgaggcggcggagctgatccgccgg
gtggaggagggcggctgtcccgcggcggtcagcggcctccagccggtgcagcgggcctgc
gtgggcgcggcggtggcggcagcctgcggccgtccggcggtgttcctctgcggggacgag
cgggaggtccaggtcctctccgctgatctggagaccctgacgggccgccgccccgtgacc
ctgcttggccgggagtggcagttccgccccggggccgtgggttctcgggactgggagcgg
agccgtctggcggcgctgtacgccctggcccagggggacgcgccggtggtggtggccacc
gcggacggcctcatggcccggaccctgccgccggagaccctgcggtccctggccatcacc
ctggaggtgggggggcaggcagagctgggcgcgctggcggagcaactgctctccgccggg
tatacccggtgcgagcaggtggagggcgtgggccagttcgccctgcggggcggcattctg
gacgtgttctctcccctgatggaccagccggtgcggtgcgagttttttgacgatgagatc
gactccatgggcgccttcgaccccggcacccagcggcggacccggaacgtgtcctccgcc
cggatcctgccggcggcggaggtgctgccccactgcgcccccggaggcctgcccggtctt
gcggaccagctgaccgccctggcggagaagctggcgaaaaagcagaagacggaggccatc
gtccagacgttgcgggaggacgcggagcggctgcgcagcggcgcggccccgggggcggcg
gaccggtatctggcagccatctatccgactgtcaccgccggggtccactacctgcctccg
gacgcggtggtgttcctcagtgagagcggccgggtggacgagcgggtgaagaacacggtc
ctccagcagaagcaggacgtggaggcgctgctgtccgccggggtgctggcgggggagtac
gcccatctgaccctcaccgccgaggaactgtacgccgcgctggaggacttccccgtgatc
ctggaggactctctgcccacctcccggcaccccctgcggccccggggcctcctgaccatg
aatgccaaacagctcagctcctacggcggcagcctggagaccgccgtcacggatctggag
cactaccgctcctccggcagcgcggtgctggtgctctgcggtggggagacccgggcgaag
aatctccaccggctgctggaggagaagggcatcccggccaccctggatctaagcggcgcc
gccatgcctgcggcgggggaggtgcgcctctccctgggggccctgtccgctggcagcgag
tggccggcgctgaagctggcggtgctgacagagggccagctgacggccccggccatgcgc
aagcgccagcgggtgaagaaggactccaaccggcagaagctccagtcctacaccgacctg
tcccccggagacctggtggtccatgagcaccacggcgtgggccggttcgtgggcatccag
cggatgccggtggacggcgtggagaaggactacatcaagatcgactacgccggcggggac
tgcctgtacgtccccgtgacccagctggatctggtgagcaagtacatcggcggaggcgag
gacaccgagcgcaccaagctcaataagctggggggcgccgagtggacccggcagaaaacc
aaggccaagaaggccgccaaggatctggccaggggcctcatcgcgctgtatgccgagcgg
cagaagcggccgggcttcgccttctccccggactccccctggcagcgggaatttgaggag
tcctttgactacaccgaaaccgacgaccagctgcggtgcatcgcggagatcaaggcggac
atggagaagccacggcctatggaccggctgctatgcggcgacgtgggctacggcaagacg
gaggtggcactccgggccgtgatgaagtgcatcctggacgggaaacaggccgccatcctg
gtgcctaccaccgtcctggcccagcagcattacgccaccgctgtcagccggttccgggac
tttccggtgaagatcgaggtgctgtcccgcttcacccccgccagggagcagaagcggatc
ctggaggccgccaaaaacggcggcgtggacctgctgatcggcacgcacaagctgctgcag
aagagcatggcgttcaaagacctgggcctgctggtgatcgacgaggaacagcggttcggc
gtcacccacaaggagcggctgaaggagatgagccgccaggtggacgtgctgaccctctcc
gccactccgatcccccggacgctgaacatggcactttcgggcctgcgggacatgtccacc
ctggaggagcccccggcggaccggcagccggtgcagacctatgtgctggagcacgactgg
gccatcattgaggatgccgtccgccgggagctgggccggggcggccaggtatactacctc
cacaaccgggtggagagcatcgacgccaccgccgcccggctccagaagatgctggggccg
gaggtccgtatcgtcaccggccacgggaagatgacggagcaggagctgtcctccgtcatg
caggccatggtggacggggaggcggacatcctggtctgcaccaccatcatcgagaccggc
atcgacatccccaacgtgaacacgctcatcatcgaggacgcggacaagatggggctggcc
cagctccaccagatccggggccgcatcggccgcagcgcccggcgggcctacgcctatctc
acctaccgccggggcaaggtgctgcaggagaccgccgccaagcggttggcggccatccgg
gagtatgtggagttcggctctggcttcaagatcgccatgcgggacctggagatccggggc
gcggggaacctgctggggccggagcagtctgggtatctcatgagcgtaggctacgacctg
tacctgaagctgctggaggaggccgtcctggaggagcgtggcgaggagaagcggatcgag
acggagtgtgccgccgacctgacggtgaacgcccatatcccggaccggtacgtcccctcg
gcggaacagcggatggacctgtaccgccgcatcgccgccatccgcacggacgaggacgcc
tcggatctgctggacgagatgctggaccgctacggcgaggcgcccaagtccgttctggcc
ctgctggacgtggccctgctgcgttctgccgcggccaaggccggcgtgtccgatatctcc
cagaagggcagcctcctgcggctgcagctgggagtgttccacccacaggccctggtggcg
gtgtgcggccacgccaagtaccgccagcggctgacgctggcggcgggggagatccctgcc
ctcaccctgaagctcaagcccggggaggatgtgctggaggccgcccgggacctggtggag
gacctgaagctggccgcggaggaggccgcgggcgggaccccgtaa
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