Ooceraea biroi (clonal raider ant): 105277044
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Entry
105277044 CDS
T05778
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03013
Nucleocytoplasmic transport
obo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105277044
03015 mRNA surveillance pathway
105277044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105277044
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105277044
mRNA cycle factors
P-body specific factors
105277044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
105277044
NCBI-ProteinID:
XP_011333481
LinkDB
All DBs
Position
3:12282071..12286878
Genome browser
AA seq
1155 aa
AA seq
DB search
MSEITSETAPAETETNAEDPNAVSEEDKTYLTQYVRETEQRLATKEEIRAANLNPTRPPD
TSFSKLDSSLKRNTTFVKKLKNFSMTQLDTVLKDMTNLNLTKYISEVATALVDAKIKMTD
VAPAIRVCSFLHQTYAEFSTHFFENWQRILSLKIGDKIANPSKLRVDLRFYAELVNAGIF
THKQGLPLLGSVLTVLINMDKEDHNNVSIILSFCRHCGEDYAGLIPKKVRELSEKLNVSI
PRSKLLSPDKQQNVKLLLRDYYNSLCKHLLKEHKELQAFEKQNRKILQTRGELSSERKEK
LEALQVSYDRLLTSVQSFSETLDEPMPELPVDSEMKTEAEETLKMINEGEDSSMLEDMWG
DEETKRFYESLPNLTVFLPGSYQVPSKETSKDTAKADAPITEDALDEEIVFDELEETEKP
EEPPEIEVEEPQVSSTSNKILLDAFLAHLPNCVNRELIDNAAVNFLLNLNTKHNKKKLVK
ALFGVSRIRQDLLPFYSRLAAILYPVMPEIGNDLCQMLKQDFKYHVRKKDQINIESKIKV
VRYIGELVKFKLYSKIEALYCLKVLLHDFTHHHIEMACNLLEICGRYLFCSPDSHQRTKV
YLEQMMRKKAVTALDSRYVTIIENAYYYVNPPESTGGITKKDRPPVHEFIRKLLYQDLSK
TNTDKVLKWMRKLDWEDESVSSYAIKCLTAAYNVKYPNIRCVGSLLAGLVAHYETIGPQV
VDGVLEDIRLCMEINLPKFNQRRIAMVKYLGELYNYRMVESSDIFRTLYLLITFGVSVDH
SSPSILDPSDHLFRIRLVCTLLETCGQYFSGGSSKKKLDYFLVFFQNYFWFKYTDPVWTA
ENPFPVGVDYMYRDTLTMLRPKMQLFQSYKEAQCAVEELRNTLYPTLGNPPVDDAPAEGE
NDMGVIMEADEESAMAGNGSGDAKGIAELHFEESEDYSEAQSEEEWTADAERDGTQENTQ
GDQSLSAEGGTEGVIMDVTEELSAALPAGPRRVNCPEDDDFLSALDKMVSDNIQDRMRDS
VKPQQVDISVPLHVKSTKKTYEQLQERPTDNSTVDFVLMLRKGNKQQYKNLAVPVSSELA
MNLRNREQEQKEEKERVKRLTLNITERQEEEDYQETMNQSTRPVTVNLNRERRQKYNHPK
GAPDADLIFGPKKIR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagattacaagcgaaacagcgccagctgaaacggaaacgaatgctgaagatccg
aacgctgtttcagaagaggacaaaacatacttaacacagtatgtgcgggaaacggagcaa
agacttgcaacaaaggaagagatccgtgcggctaatctgaatcctacaagaccgccagat
acatcattcagtaagctcgattcaagcctcaagcggaatactacttttgtcaagaaacta
aagaattttagcatgactcaactcgacactgtgctgaaagacatgacgaacttgaacctg
accaaatacataagcgaagttgctacggctctggtggacgccaaaataaagatgaccgac
gttgcacccgccatcagagtgtgcagcttcctccaccagacgtacgccgagttctctact
catttcttcgaaaactggcaaagaatactgtcactgaagatcggcgacaaaattgcgaat
cccagcaagctgagagtagatcttcgattctacgcggagctagtgaatgctggaatattc
acgcacaagcaaggtctaccgctgctgggctctgtgctgacggtattgatcaatatggac
aaggaggatcacaataatgtcagcataatattgagcttctgccggcactgcggcgaggat
tatgctggcctaattcctaagaaggtacgagagctgtccgagaaattgaacgtctcgatt
cctaggagcaaactgctatcgccagacaagcagcaaaatgtcaaactgctattgcgagat
tactacaactccctgtgcaagcatctactgaaggagcataaggagctgcaggcgttcgag
aagcagaatcgcaagatactgcagaccagaggcgaattgagttcggagaggaaggagaag
ctggaggctctgcaagtgtcttacgatcgtttgctaaccagcgtgcaaagtttctccgag
acgctggatgaaccgatgcctgagcttccagtagacagcgagatgaagacggaagcagag
gagacgctaaaaatgatcaacgagggtgaggatagcagtatgctggaggatatgtggggt
gatgaggaaacgaaacgcttttacgagtcgctgccgaatttgacggtcttcctaccagga
tcataccaggttccctcgaaggaaacctcaaaggacacagcgaaggcagacgcgccgata
accgaagatgctctagacgaggagatagtgttcgacgagctagaggagaccgagaagccc
gaggagccgccggaaatagaggtggaggagccacaagtatccagtacgagcaataaaata
ctactcgacgccttcttggcgcatctgccgaattgcgtgaatcgcgaattgatcgacaac
gctgcggtgaacttcctgctgaatctcaatacgaagcacaacaagaagaagctggtgaag
gctctcttcggagtctccaggatccgccaggatctactgccgttttattcccgcctagcg
gctatcctctatccggtgatgcccgaaatcggcaatgacttgtgccagatgttgaaacaa
gatttcaaatatcacgtgcgcaagaaggatcagatcaacatcgagtcgaagatcaaggta
gtccgttacatcggcgagctcgtcaaattcaagctctactccaagatagaggcgttgtat
tgccttaaggtgctgctacacgactttacgcatcatcacatcgagatggcgtgcaacctg
ctagagatttgcggtcgatatctcttctgctcaccggactcgcatcaaagaactaaagtt
tatttggaacagatgatgcgcaaaaaggcggtcacagcacttgattcgcgctacgtcacg
atcatcgagaacgcgtactattacgtaaacccgcccgaatcgaccggtggcatcacgaag
aaggatagaccacccgtgcacgaattcataagaaaattgctctaccaggacctctccaag
acgaatacggacaaggtgctcaagtggatgcgtaaactagattgggaggatgagagcgtg
tcgtcctacgcgataaaatgtctcactgccgcctacaacgtcaagtaccctaatattcgt
tgcgtcggtagcttattagccggcctggtggcccattacgaaaccatagggcctcaagta
gtcgacggggtgctcgaagatatacgtttatgcatggagattaatctgcccaagttcaat
cagcgacgcatcgccatggtcaagtacctgggcgaactgtacaactaccggatggtcgaa
agtagcgacatctttcgtaccttgtacctgctcatcaccttcggcgtgagcgtggaccac
tcctcgccgagcatcctagatccatccgatcatctcttccgcattcgtctggtgtgcaca
ctgctggagacctgcggacagtacttcagcggcggttccagtaagaaaaagctcgactac
ttcctcgttttctttcagaattacttttggttcaagtacacggatccagtctggacggca
gagaatccgtttcccgtcggcgtggattacatgtaccgtgatacgttaacgatgctgcgg
ccgaaaatgcagctgttccagagctacaaagaggcgcagtgcgccgtagaggagctgcgt
aacactctctacccaaccctgggtaaccctcccgttgacgatgctcctgccgaaggcgag
aacgatatgggcgtaatcatggaggccgatgaggaatcagcgatggctggaaatggtagc
ggcgacgcaaagggcatagccgagttacacttcgaggaatcggaggattactcggaggca
caatccgaggaggaatggaccgccgatgcagaacgagacggcactcaggagaatacccaa
ggcgatcagagtttgtcggcggaaggcggtaccgagggtgtgatcatggacgtgaccgag
gaattgagcgccgctttacctgctggaccacgacgcgtgaattgtccggaggacgacgac
tttctctcagcgctggacaagatggtatcggacaatatacaggaccgcatgcgggattcg
gtgaagccacagcaggttgacatctccgtaccgttacatgtgaagagcacgaaaaagaca
tacgagcagcttcaggaaagaccgaccgacaacagcacggtggactttgtgctaatgctg
agaaagggcaacaagcagcaatacaagaatttggcagtgccggtgtcgtccgagttggcc
atgaatctcaggaatcgcgaacaggagcaaaaggaagagaaggagcgcgtgaagagactg
actctgaacatcactgagaggcaagaagaggaggattaccaagaaaccatgaaccagagt
accagaccggttactgtgaatctaaacagagaaagacgacagaagtataatcatcccaaa
ggagcgccagatgccgatctcattttcggaccgaaaaaaattcgataa
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