Oryza brachyantha (malo sina): 102702680
Help
Entry
102702680 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102702680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obr03041
]
102702680
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102702680
Spliceosome [BR:
obr03041
]
Complex A
U2 snRNP components
U2 related factors
102702680
Complex B
102702680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
102702680
NCBI-ProteinID:
XP_015696029
UniProt:
J3MQK7
LinkDB
All DBs
Position
8:complement(2452977..2458192)
Genome browser
AA seq
1060 aa
AA seq
DB search
MGSGDDVPSSKHHHRDKDKDRERSSSRHHRDKDRDRDRERSSSRHHHREERDDERDRDRE
RRHREKERDREERKAREREEREREKEEKERERARRREERDREERDRDRDRDRDRDRDRER
SRRRDAEEDEDDRDRKRRRRSSHHHRDAEPEGPPAAREEEEEVDEEEAERRRQKKKEEEQ
QQLDEEMETRRRRIKEWQEMKRREEETKRREQQESGVGTSAAATGADDGGNAGKKWTLDG
EESDEEGDKEDAKKSDDNGGSGAGIMDVDTQNGDSNANGATAMDEDDEIDPLDAFMNSMV
LPEVAKLESMPTANVDDKNDKSVKDAVTDGDKKGPKKVMGRIIQGEDSDSDYDDDVDDED
GSEDEDDEEFMKRVKKTKVEKLAIVDHSKIDYQPFRKNFYIEVKDITKMATEEVAAYRKQ
LELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAK
TGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKVLGINCV
AIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDM
GFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLV
EVRPENERFLRLLELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTD
RESTLADFKSNVCNLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKG
FAVTFISEEEERYAPDLVKALELSEQAVPEDLKSLADRFMAKVKQGTEQAHGTGYGGSGF
KFNEEEDEARKSAKKAQAREYGYEEDKSDSDSDEEGGVRKAGGDLAAQAIAAAQAAAALV
AAKAASNANQQTQGTAVGPLLPLAIASNAQNNEATARALQAAFNIQQNLARIQAHAVPEH
YEAELEINDFPQNARWKITHKETLGPIQEWTGAAITTRGTFIPQGKIVGANERKLYLFIE
GPTELSVKKAKAELKRVLEDCANHALNLPGSAQTGKYSVI
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggggtctggtgacgacgtcccctcctccaagcaccaccaccgcgacaaggataaggac
cgcgaaaggtcctcctcccgccaccaccgcgacaaggaccgggaccgggaccgcgagcgc
tcgtcgtctcgtcaccaccaccgcgaggaacgggatgacgagcgggaccgggaccgggag
cgccgccacagggagaaggagcgggaccgcgaggagcggaaggcgcgggagcgggaggag
cgggagagggagaaggaggagaaggagagggagcgggcacggcggcgcgaggagagggac
cgtgaggagagggacagggacagggaccgggaccgggaccgggaccgggacagggagagg
tcgaggaggcgagacgcggaggaggacgaggacgatcgcgaccgcaagcgccgccgccgg
tcctcgcaccaccaccgcgacgcggagccggaggggccgcctgctgccagggaggaggag
gaggaggtggatgaggaggaggctgagagacggcgtcagaagaagaaggaggaggagcag
cagcagctggatgaagagatggagacgcggcggcgccgcatcaaggagtggcaggagatg
aagcgccgcgaggaggagactaagcgccgtgagcagcaggagtccggagttggcacttca
gctgccgccactggagcggatgatggtggcaatgccgggaagaagtggaccttggatggc
gaggagtccgatgaggagggggataaggaggacgctaagaagtcagatgataatggtggt
tctggtgctggtatcatggacgttgatactcagaatggggatagtaatgcaaatggcgcc
actgctatggatgaggatgatgaaatcgatccgcttgatgcattcatgaactcgatggtg
ttgccagaggtcgcaaagctggagagcatgcctactgccaatgtggatgacaagaatgat
aagagtgtgaaggatgctgtgactgatggggataagaaagggccgaagaaggtgatgggg
agaattattcaaggagaagactcggactcagattacgatgatgatgtggatgacgaggat
ggatcagaagatgaggacgatgaggagttcatgaaacgtgtcaagaagacaaaggtggaa
aagttggcaattgttgaccattctaagatcgactaccagccgttccggaagaatttttac
attgaggtgaaagacattacaaagatggccactgaggaagtggcagcttatcggaagcag
ttggagctcaaggtgcatgggaaagatgtacccaagccaataaagacatgggtgcagagt
gggcttaccagcaagctccttgatacaatcaagaaacttggttttgagaaaccaatgcct
atacaggcacaagcattaccaatcataatgagtggtcgtgattgtataggaatcgcaaag
actggatcaggcaagactcttgcatttgtcctaccaatgctgaggcatgtcaaagaccag
ccagctgttgtgcctggggatggcccaattgggcttataatggctcccactagagaactt
gtggttcagatacattcagacatcaagaagttctcgaaggtgcttggcatcaattgtgtt
gctatctatggaggttcaggggttgcccaacagattagtgaactgaagaggggtgcagaa
attgttgtttgtacaccaggaagaatgatcgatatcctttgcacaagcagtgggaagatt
actaaccttcggagagttacgttcttggtgatggatgaagctgataggatgtttgatatg
ggttttgagcctcagattactcggatagttcagaatacccgcccagataggcagacagtt
cttttctcagccacttttccacgtcaggtggagatactggcacggaaggtgctcaccaag
cctgttgagatccaggtgggcggaaggagtgtcgtcaacaaggatatcactcaactggtt
gaggtgcggccagaaaatgagaggttcttgaggctgttggagctgcttggagagtggttt
gataaaggcaaaattcttgtttttgtccattcacaagataaatgtgattctctactcaaa
gacctgttccagcatggatatccatgcctatctctgcatggtgggaaagaccagactgac
cgtgaatcaactcttgctgatttcaagagcaatgtatgcaacttgctgattgctaccagt
gttgctgctaggggtttagatgtcaaggagcttgagcttgttgtgaattatgatgtccca
aaccattatgaggattatgttcatcgtgttgggcgaactggccgtgctgggaggaaggga
tttgctgtgacttttatttctgaggaagaggagcgttatgctccagaccttgttaaagct
ttggagctctctgagcaggctgttccagaggaccttaaaagtctagctgatcgttttatg
gcaaaggtgaagcagggaacagagcaggcccatggaacaggttatggtggaagcggtttc
aagttcaatgaagaggaggatgaagcaaggaaatctgctaagaaagctcaggcaagggaa
tatggatacgaggaggacaaatcagattcagattctgatgaggaaggaggggttcgtaag
gcaggaggcgaccttgcggcacaagctattgctgctgctcaagctgctgctgctttggtt
gcagccaaggctgctagcaatgccaaccagcaaacacaaggcactgctgtagggcccttg
cttcctctagccattgcttcaaatgcacagaataacgaggccacagcacgtgcactgcag
gctgcatttaacatacagcaaaatctggctaggatacaagcacatgccgtcccagaacat
tatgaggctgagcttgaaattaatgacttcccacaaaatgcccgctggaagatcactcac
aaagagacattgggtcctatccaggaatggactggagctgcaatcactacaaggggaacg
tttattcctcaaggaaaaattgttggtgcaaatgagcgcaagctgtacctgttcatagag
ggccccactgagctatctgtcaagaaggcaaaagcagaattgaagcgtgtccttgaagat
tgtgctaaccatgctttgaaccttcctggttctgcccaaactggaaaatactctgttatt
tga
DBGET
integrated database retrieval system