Oryza brachyantha (malo sina): 102708334
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Entry
102708334 CDS
T02995
Name
(RefSeq) putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102708334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obr03400
]
102708334
Enzymes [BR:
obr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102708334
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102708334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
102708334
NCBI-ProteinID:
XP_040379099
LinkDB
All DBs
Position
4:complement(17952737..17960618)
Genome browser
AA seq
1298 aa
AA seq
DB search
MAATVRFGLLVAMLQAMSRDRTAAKKRGRLRALLDRAYGPSGRDDYFSALRLVLPGLDRE
RGSYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGGSFRNAGNFALVAAEVLQRRQGM
TSGGLTIKEVNDALDRLAATENRSEKASIISSLIKKTNALEMKWLLMIILKDLKLGISEK
SVFHEFHPDAEDLFNVTCDLRLVCEKLNDRSQRHKRQDIEVGKAVRPQLAMRVSNASSAW
KKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYAPGMSKVIKEHVLVDRCIL
DGEMLVWDTVLNRFAEFGSNQEIAKAAREGLEMDRQLCYVAFDILYAGDTSVIHQSLTER
HEILRKVISPLKGHLEILVPTGGLNMHRPPDEPCWSIFVRNLDDVEKFFKDTVDNREEGI
VLKDLESKWEPSDRSGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAVP
SDDNSYPKRFLSFCRVGTGLSDEELDALITKLKPHFRKNEYPKKPPRFYEVTNHSKERPD
VWIESPDKSVIISITSDIRTIKSEVFAAPYNLRFPRIQRVRYDKPWNECLDIQAFVDIVH
SSNETTHRAADDDSGLKNVKLKQPRTNKKGEKKNVSIIPSRLMKTDISGLKGETLIFANT
MFYFVNIPPSYNLDYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAATRQGRIIHY
SWILDCCKEKCLLHLQPKYILFLVDFARHKFPEEIDSYADYFYWDIDISDLKQIFSNMDR
AVVDSNMVHHYKKKYYTDERFFFFQGCCVYFYHAPLVNADYNVISDLALKRVKQDLTMHG
GEVCSILAPATHLIIVSVLEAYNFDMLYKSFLPSERRYLHDKRLHVVSNKWLEDSVEKQR
KLPETTYSLKPDTLEEIEVERSEETVQPSNHKHEENEEIDRSHVNHVPKKRGRPSSSTSR
AAKLAPRPVRRTRPRKGNQHAKIDDVEPEESGHGETGQDDQIPDTDNISKMEQDGFDKDQ
VSPRPVQRSRARRGKRHAKIDYGGSEENDPGATGQDDQKFDADYISKIEEDSNDRDQGSH
PAAPRVLRRSMPQRGKRHAKIDYGESEESSPGETAQDDKLDADSIYRMEEHNRDKYQEPP
PGAQFITLDEQEAKGIKISTMETPSDRQHEINDAVVRTGTSEATSSATCAKMEQMVDPLH
AMLLDMIPSLRQTKTEDSNRVPEAKAEKNPPWAGSSTPNYEFPVPEATSSGPNSSVPAPH
AGSSTQSNGVPAPDPTAGAPKKKKVSYKDVAGELLKDW
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggtgcggttcgggctgctggtggcgatgctccaggccatgtcgcgggac
cgcacggcggcgaagaagcggggccggctccgcgcgctcctcgaccgcgcctacgggccc
agcggcagggacgactacttcagcgcgctccgcctcgtgctcccggggctcgaccgggag
cgcggctcgtacgggctcaaggaggccgctctggcgtcagtcctcgtcgacgccctcggg
atagcgaaggactcgcccgacgccgtccgcctcaccaactggcggcgcgggggcagcttc
cgcaacgccggcaacttcgcactcgtcgccgccgaggtgctgcagcggagacaaggaatg
acttctggaggattgacgataaaagaggtgaatgacgcacttgatcgccttgctgcaact
gagaataggtctgagaaggcttcgattatttctagtctgatcaagaaaaccaatgccctt
gaaatgaagtggctcttgatgattattctgaaagatttgaaattggggatcagtgagaag
agtgtgttccatgagtttcatcctgatgctgaagacttgttcaatgtcacttgtgatctg
aggttggtctgtgaaaagcttaacgatcgaagtcagaggcataaacgtcaggatatagaa
gtggggaaggctgtcaggcctcagctagctatgagagtcagtaatgcctcatctgcttgg
aagaagcttcacggaaaacaagtggttgctgagtgcaaatttgatggtgaccgtattcaa
attcacaagaatggggaggagattcatttcttctcaaggagctttcttgatcactcggaa
tatgcacctggaatgtccaaagttatcaaggaacatgtcttggttgataggtgtattttg
gatggagaaatgcttgtttgggatactgtgcttaaccggtttgcagaatttggttcaaat
caggagatagcaaaggctgcaagggaggggctggagatggatagacagttgtgctatgtt
gcttttgacattctttatgctggagacaccagtgttatccaccaaagtttgacagagcgg
catgaaattctgcgtaaagtcatcagtcctttgaagggccatctcgaaatattagttcca
acaggtggtctgaacatgcatcgtccaccagatgaaccatgctggtccatctttgtgcgc
aatcttgatgatgtggagaaattcttcaaggacactgttgataacagagaagagggaatt
gtattaaaggaccttgagtccaagtgggaacccagtgaccggagtggaaagtggcttaaa
ttaaagcctgattatatacatgctggtgctgatctggatgttattattataggtggatat
tatggctcaggacgtcgcggaggagaggttgcccagtttttagtcggtcttgcagtgcct
tcagatgacaatagctatcccaaaaggtttctttccttttgtcgagttggtactggtctt
tctgatgaagagcttgatgctcttatcaccaaattgaagcctcatttcaggaaaaatgag
taccccaaaaaaccacccagattttacgaagtgacaaaccattcaaaggaaaggccagat
gtttggatagaaagccctgataagtcagtcataatatccataacaagtgatattcgaaca
atcaaatctgaggtatttgctgccccatacaacttaaggttcccgcgcattcaaagggtg
agatatgataagccatggaatgagtgccttgatattcaggcatttgtggacatagtacat
tcaagtaatgagacaactcacagggcagcagatgatgatagtggtctgaaaaatgttaag
ttaaaacagccgagaacaaacaaaaagggggagaaaaagaatgtgtcaattatcccttca
cgtcttatgaagactgacatttcaggcctaaagggagaaacactaatatttgcaaacaca
atgttctattttgtcaacattcctccatcatataatcttgactattttcataaactggtt
gtggagaatggcggatctttctcgatgaatcttaatgactcagttactcattgcatagca
gcagagaagaaaggtatcaaatatcaggcagccacacggcagggaaggatcattcattat
tcctggatcttagactgttgcaaagaaaaatgtcttcttcatttgcagcctaagtatatt
ctctttctcgtggattttgcgaggcacaaatttcctgaagagatcgactcatatgctgac
tatttctactgggacattgacatttctgacctcaagcagattttcagcaacatggacaga
gccgttgttgattcaaacatggtacatcactacaaaaagaagtactacacagatgagaga
ttcttcttcttccagggttgctgtgtctacttctaccatgcacccttggtgaatgcggac
tacaatgtaatatctgatcttgcactgaagagggtgaagcaggatcttaccatgcatggt
ggtgaagtttgtagcattcttgctcctgctactcatttaattatagtttcagttctagaa
gcctacaattttgacatgttgtacaagagcttccttccttctgagaggcgttatctacat
gacaaaaggttgcatgttgtcagtaacaagtggttggaagattcagtggaaaaacaaaga
aagctgcctgaaaccacttacagccttaaaccagatacattagaggaaatagaagttgaa
agaagtgaggaaactgttcagccttctaatcacaagcatgaggaaaatgaggagattgat
agatcccatgttaatcatgtaccgaagaaaaggggaaggccatctagtagtacctccaga
gccgcaaagcttgctcctagaccagtccgaagaacacgacctagaaaaggaaatcaacat
gcaaaaatagatgatgttgaacctgaagaaagcgggcatggtgaaacaggccaagatgat
caaataccggacactgataacatctctaaaatggaacaagatggctttgacaaagaccaa
gtttctcctagaccagtccaaagatcaagggctaggagaggaaagcggcatgccaaaatc
gattatggtggatctgaagaaaatgatcctggtgcaacaggacaggatgatcaaaagttc
gatgcagattacatctctaagatagaagaagatagcaatgacagagaccagggatcccat
ccggctgctcctagggtgctccgaagatcaatgcctcaaagaggaaagcggcatgcaaaa
atagattatggtgaatctgaagaaagcagtcctggtgaaacagctcaagatgataagttg
gacgcagattccatctatagaatggaagaacataaccgtgacaaatatcaagaaccacct
ccaggtgcccagtttatcacattggatgagcaagaggccaaaggaatcaaaataagtacc
atggagacaccaagcgaccggcagcatgaaatcaacgacgcagttgttagaacagggact
tctgaggcaaccagtagcgcaacatgtgcgaagatggaacaaatggttgatccactgcac
gcaatgcttctggacatgattccatcgcttaggcagacgaagacagaagatagtaacagg
gttcccgaagccaaagctgagaagaatccaccttgggcaggaagttctacacctaactat
gagtttccagtaccagaggcaacgagttctgggcctaattctagcgttccagcaccacat
gcaggaagttccacacagagtaacggggttccggccccagaccctactgctggtgctcca
aagaagaaaaaggtcagctacaaagatgtcgccggtgaacttctgaaggattggtga
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integrated database retrieval system
