Oryza brachyantha (malo sina): 102717790
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Entry
102717790 CDS
T02995
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X2
KO
K14328
regulator of nonsense transcripts 3
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03013
Nucleocytoplasmic transport
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102717790
03015 mRNA surveillance pathway
102717790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102717790
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102717790
mRNA cycle factors
P-body specific factors
102717790
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
102717790
NCBI-ProteinID:
XP_006652316
UniProt:
J3LY51
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Position
4:complement(11136807..11143844)
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AA seq
512 aa
AA seq
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MAAARAHVKDPAHRTKVVLRRLPPAIAPQAVVDQVDARFAGRYDWSCFRPGNASQKNHRY
SRLYLNFKSPEDVVEFAEVFSGHVFVNEKGAQFKALVEYAPSQQVPKLNSKKDARQGTIM
KDPEYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMA
QRSGSSRLSRKVAGAVTSSPSPSKRGSEKRRTSASTQYVLRDNAKEKPTYILVPKKDEHA
QREKNTSGTSDATIGGISGSAQVAENKKEKIVLLKGRARVDSNTSDVTTQQQSGTPMKNA
ALPSSRQDPRLEGSGRIIKTILSNKEGRHVVMSQHDQEGHIITAEKRPPRIPNPRSTVKD
QLVENAEKGHLDDKHSHLHGSGPISEKTERHARNRDRPDRGVWAPRRYDKSVSGGTHSPS
EFSAMQQLSGENFSQHADGHGERKIDPRGHGGIRGGPVENGHKHANRRGPPRGLKEMEIS
ASTSDGKPSKRGSANYGAHERQVWVQKSSSAT
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgcgggcgcacgtgaaggacccggcgcaccggaccaaggtggtgctcagg
aggctgccgccggcgatcgcgccgcaggccgtcgtggaccaggtcgacgcgcgcttcgct
gggcggtacgactggtcgtgcttccgccccggcaatgccagccaaaagaatcacagatat
tctcgactctaccttaacttcaagagcccagaagatgttgttgagtttgctgaggtcttc
agcggtcatgtgtttgtgaatgaaaagggtgctcaatttaaagctcttgtggaatatgca
ccatcgcaacaggttcccaagttgaattcaaagaaggatgctcgtcaaggaactataatg
aaagatccggaatacttggagtttcttgagtcaatttcaaagcctgctgagcatttgcca
agtgctgaaattcagctggaaaggaaagaagctgaaagggcagctgcgggaaaggaacca
cctgttgtgacacctcttatggtctatgttcgccagcaaagggcggctaagagtatggct
cagagatctggaagtagtagactcagtagaaaagttgcaggtgctgttactagcagtcct
agtccttctaaaaggggttctgagaagcgcaggacctccgcttcgacgcaatatgtttta
cgagacaatgccaaggagaagccaacttacatcttagtgccaaagaaagacgagcatgca
cagagggaaaaaaatacttctggaacttcagatgctacaatcggtggaatttctggatct
gctcaagttgctgagaacaaaaaagagaaaattgtgcttttgaaaggaagagcaagggtt
gattctaatacatctgatgtcacaactcagcagcagtcagggacccctatgaaaaatgct
gcactacctagttctaggcaagacccgcggcttgagggcagtggcagaattattaagact
atactctcaaacaaggaagggcgacatgtggttatgtctcaacatgatcaggaaggtcac
ataattactgctgagaagcggccaccacggattccaaacccacgctccactgttaaagat
caactagttgagaatgctgagaaaggtcatttggatgacaaacacagtcatctccatggc
tctggacccatcagtgagaagactgaaagacatgctagaaatagagataggcctgatcgt
ggtgtatgggcccctcgtcgctatgacaagtctgtatctggtggcacacattcaccatct
gaattctcagcaatgcagcaactgtctggagaaaatttcagtcagcatgcagatggccat
ggagagagaaaaatagacccaaggggtcatggtggtattcgtggaggccctgtagaaaat
ggacataaacacgctaaccgccgtggtcctccacgtggtctgaaggagatggaaatttct
gctagcacatctgatggaaaaccttcaaagagaggctctgccaactatggtgctcatgag
aggcaagtgtgggttcaaaaatcaagctcggcgacgtga
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