Oceanimonas sp. GK1: GU3_03840
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Entry
GU3_03840 CDS
T01667
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
oce
Oceanimonas sp. GK1
Brite
KEGG Orthology (KO) [BR:
oce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oce03019
]
GU3_03840
Enzymes [BR:
oce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GU3_03840
Messenger RNA biogenesis [BR:
oce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GU3_03840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AEY00525
UniProt:
H2FZS8
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All DBs
Position
822959..825355
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AA seq
798 aa
AA seq
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MQQALAASQIIVEAPPGAGKSTWLPLWLLQQAAIPGRIIMLEPRRLAARAIAQYLAAQLG
EQPGQTVGYRMRGESRTGKQTRLEVVTEGVLTRMLQADPELGGVSLLIFDEFHERSLQAD
LALAFALECQALRDDLKIMVMSATLDGLALDTLLPEAELVVSRGRSFPVALEYRPRNQHS
PLEESLGRAVLDALGREAGSLLAFLPGEREIRRAEEWLRERLPEDVELRPLYGRLSLAEQ
QAAIAPATDGRRKVVLATNVAETSLTIEDIRLVVDSGLERQARFDPDAGLTQLHSRLIGQ
ASATQRAGRAGRLQPGTCIRLWSKEQQERLAPRRPAEIEQSSLAGFVLECAAWGAEPEQL
PLLTPPPAPLLAAARAELEALELLTGNQLTALGRRVWQLGTEPWLGQLLLTALDWQQRGH
DGALADAAWLLALLEEGRPGDGPLSGQLLAARGRLKAAARRWFERAGQPMAEPVGTYVGP
LLANARPQWVGQLRKLRRYGLAGGLSADLPDGSPLTGKEWLAVAALSRGERGVFIQAAEP
VALTQLQRFVPERFSEREQLEWDDAANRVRAERHWCFGRLVLRSTPLDSVSPEQRAQCLL
QELQKRGWSALPLDERARQIWLRLKLAGQKLADRGFSPCDEDAWLAEAEHWLGPHLHGLG
RWDELTKLDWSAILLSRLDWSQRQLLDTLLPGHLELATGTRAAIRYRAEEDPVLPVKLQE
MFGQAGSPLLAEGRVPLVLELLSPARRPLQLTRDLAAFWAGAYQEVKKEMRGRYPKHPWP
DDPANTAPTWHTKKHMKH
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
ttgcagcaagccctggcggccagccagatcatcgttgaggcgccccccggcgccggcaag
tccacctggctgccgctgtggctgttgcaacaggccgccattcccggtcgcatcatcatg
ctggagccccgccggctggcggcccgcgccattgcccagtacctggccgcccagctgggt
gaacagcccggccagaccgtgggctaccgcatgcgcggcgaaagccgcaccggcaagcag
acccggctggaggtagtcaccgaaggggtgctgacccgcatgctgcaggcggatcccgag
ctcggcggcgtgtccttgctgattttcgacgagtttcacgagcgcagcctgcaggcggac
ctggccctggcttttgccctggaatgccaggcgctgcgcgatgatctcaagatcatggtg
atgtcggccaccctcgacggcctggccctcgatactctgctgcccgaggccgagctggtg
gtgagccggggccgcagttttccggtggcgctggaataccggccccgcaaccagcacagc
ccgctggaagaaagcctgggccgggcggtacttgacgccctggggcgcgaagcgggcagc
ctgctggcctttctgcccggggagcgggaaattcgccgggccgaggagtggctgcgcgag
cggctgcctgaagacgttgaactcaggcccctctatggtcgtctttcccttgcggaacag
caggcggccattgcgccggcgacggacgggcggcgcaaggtggtgctggccaccaatgtg
gcggaaacctcgctcaccattgaagacattcgcctggtggtggactcggggctggagcgc
caggcccggtttgatcccgacgccggcctgacccagctgcacagccggcttatcggtcag
gcttcggccacccagcgtgccggccgggccgggcgtctgcaaccgggcacctgcattcgg
ctgtggagcaaagagcaacaggagcggctggcgccgcgccggccggcggaaatcgagcaa
agctcgctggccggttttgtgctggaatgtgccgcctggggggccgagcccgagcagttg
ccgctgctgaccccaccgccggcgccgctgctggcggcggcccgggccgagctggaagcc
cttgaactgctgaccggcaaccagctcaccgccctgggccgccgggtctggcagctgggc
accgagccctggctgggtcagctgttgctcaccgccctcgactggcagcagcggggccac
gacggcgccctggccgatgccgcctggttgctggcgctgctggaggaggggcgtcccggt
gatggaccgctgtcgggccagttgctggcggccagaggtcgtctcaaggccgccgcccgg
cgctggtttgaacgggccggacagcccatggccgagccggtgggcacctatgtgggaccg
ctgctggccaatgcccggcctcagtgggtggggcagttacgcaaactcagacgttatggc
ctggccggcgggctcagcgccgatctgcccgatggcagcccgctgaccggcaaggagtgg
ctggcggtcgcggcattgagccggggcgagcggggagtgttcattcaggccgccgagccg
gtggcactgacccagttgcagcgttttgtaccggagcggttcagcgagcgcgagcagctg
gaatgggacgacgctgccaaccgggtgcgggccgagcgccactggtgctttggccggctg
gtgctgagaagcacgccgctggactcggtcagccccgagcagcgggcgcaatgtctgttg
caggagctgcaaaaacggggctggagtgccctgcccctggacgaaagggcccggcaaatc
tggctgcgcctgaagctggccggacaaaaactggccgaccggggattttccccttgtgat
gaagacgcctggctggccgaggcggaacactggctggggccgcacctgcacgggctcggc
cgctgggacgagctgaccaaactcgactggagtgccattttgctgagccggctggactgg
tcacagcggcaattgctggataccctgctacccggccatcttgaactcgccaccggcacg
cgggcggcgattcgttaccgggcagaggaagatccggtgttgccggtgaaactgcaggaa
atgttcggccaggccggctcgccgctgctggccgagggccgggtgccgctggtgcttgag
ctgctgtcgccggcccgccggccgctgcagctgacccgggatctggccgccttctgggca
ggagcctaccaggaggtaaaaaaggaaatgcgcggacgctatcccaaacacccgtggccc
gatgatcccgccaatacggcgccaacctggcacaccaaaaaacacatgaagcactga
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