Afipia carboxidovorans OM5 (Goettingen): OCA5_c11710
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Entry
OCA5_c11710 CDS
T01617
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OCA5_c11710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocg03400
]
OCA5_c11710
Enzymes [BR:
ocg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OCA5_c11710
DNA repair and recombination proteins [BR:
ocg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OCA5_c11710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEI05889
UniProt:
B6JFK1
LinkDB
All DBs
Position
complement(1249152..1251821)
Genome browser
AA seq
889 aa
AA seq
DB search
MTRKKLSVYQTKRDFTKTAEPSGAAKVTRGKLPRFVIQKHDATRLHYDLRLEIDGIFKSW
AVTRGPSLDPKDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGFWHSDDPAGGL
KKGDLKFTLEGKKLHGEWVLVRMRHDRTGGKRTNWLLIKHRDEAAREGEDILDQDRSVAS
GRTMEQIAQGKGRGPTPFMTAKGNAKPSRSKADRVWQSNQGTAAALRAKSVAKTKTLAKP
VQAAVRKVDHLPEFIAPQLCKSVARPSDGADWIHEIKFDGYRMQLHIQGGKVHLRTRKGL
DWTDKFPAIAKAAAKLPECIIDGEIVALDHEGHPSFASLQAALSDGDTDELIFFAFDLLF
DKDSDLRRLPLTERKARLEQLLDRQSKTSVIRYVAHFDTGGDAVLKSACRLALEGIISKR
RDALYHSGRTESWTKAKCRAGHEVVIGGWKTTAGKFRSLMVGVPHEDHLAYVGIVGTGYG
QAVVKRIMPELKKVASTTNPFGGKNAPRKTTGVHWVKPELVAEIEFAGWTGDNMVRQAAF
KGLRKDKSADEVQVDEPVVTPIAEPAPRKTNTKANTKTRAKAATRTSSSGNAVVMGLTIS
KPDKPLWPDDGKGEPVTKLDLARYMETMGEYLLPHIEGRPCSIIRAPDGIEGEKFFQRHA
TAGMSNLIDQVRVSGDRKPYIQIDRIEGLVAAAQIGGVEFHPWNCAPNEPDVPGRLVFDL
DPAPGVNFTDVITAARDLHDRLSSLGLESFCKTTGGKGLHVVTPLKDAKKDRIDWKAAKA
FAQAVCQAMAADAPERYLINMSKKKREGKIFLDYLRNDRMSTAVAPFSPRGRDFAPVAWP
ITWAQARTGLDPLKFTLRTVPALVKTSKAWAGYDRAARSLKDAIRKMGG
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgtaaaaagctctccgtctaccagaccaaacgcgacttcacgaaaaccgcggag
ccctccggcgctgcaaaagttacgcgtggaaagttgccgcgtttcgtcatccagaagcac
gatgcgacgcgactgcattacgatcttcggctcgaaatcgacggcatcttcaaatcatgg
gcggtgacgcgcggcccctcgcttgatccgaaggacaagcgcctcgccgtcgaggtcgag
gatcatccgctcgactacggcgatttcgagggcacgattccgaaaggccagtatggcggc
ggcacagtgatgctgtgggaccgcggcttctggcacagcgacgatcccgcaggcggccta
aagaagggcgatctcaaattcacgctggagggcaagaagctgcacggcgagtgggtgctg
gtgcggatgcgccatgaccgcaccggtggcaaacgcaccaactggcttctcatcaagcat
cgcgacgaggccgcgcgcgagggcgaggacattctcgatcaggatcgctcggtcgcatcc
ggccgcacgatggagcagatcgcgcaaggcaagggccgcgggccgacgccgttcatgacg
gcgaagggaaacgcaaagccaagccgctccaaagccgaccgcgtctggcaatcgaaccag
ggcacagcggcggcattgcgcgcgaaatcggtggcaaaaacgaagacgctggcaaagcca
gtgcaggcagccgtgcgcaaggtcgatcacctgccggaattcatcgcaccgcaactgtgc
aagtccgttgcccgcccgtccgatggcgcggactggattcacgaaatcaagttcgatggc
taccggatgcagttgcacatccaaggcggcaaggtgcacttgcgcacgcgcaagggcctc
gactggaccgataagtttccggctatcgccaaggcggccgccaagctgccggagtgcatc
atcgatggcgagatcgttgcactcgaccacgaggggcacccgagcttcgcctcgctgcag
gcggcgctatctgatggcgacaccgatgaactgatcttcttcgcgttcgaccttttgttc
gataaagacagcgacctgcgccgcctgccgctcaccgagcgcaaagcgcggctggaacag
ttgctcgaccgccagagcaaaaccagcgtcatccgttatgtcgcgcatttcgacaccggc
ggcgacgcggtgttgaagtcggcctgccgtctcgcgctcgaaggcatcatctccaagcgg
cgcgacgcgctctatcattccggtcgcaccgaaagctggacaaaagcaaagtgtcgcgcg
gggcacgaggttgtcatcggcggctggaaaaccaccgcgggcaaattccgctcgctgatg
gtcggcgtgccgcatgaggatcatctcgcttatgtcggcatcgtcggcaccggttacggt
caggccgtcgttaaacggattatgccggagttgaagaaggtggcttcgacgacaaatccg
ttcggcggcaagaacgcgccgcggaaaacgacgggcgtgcactgggtcaaacccgagctt
gtcgccgagatcgagttcgccggctggaccggtgacaacatggtgcggcaggccgcgttc
aaaggcctgcgcaaggataagtcggcagacgaagtgcaggtcgacgaaccggtcgtcacg
cccatcgccgaacccgcaccacgcaagaccaacaccaaggccaatacgaagactcgcgcg
aaagctgccacacgcacgtcctcctccggcaacgccgtggtgatgggcctcaccatttcc
aaaccggacaaaccgctctggccggacgatggcaaaggcgagccggtcaccaagctcgat
ctcgcccgctacatggagaccatgggcgaatatctgctcccgcacatcgaagggcggccc
tgctccatcatccgcgcgccggatggcatcgagggcgagaagttttttcagcgtcacgcc
acggccgggatgtcgaacctgatcgatcaggttcgcgtctccggcgaccgcaagccttac
atccagatcgatcggatcgaagggcttgtggcggcggcgcagatcggcggtgtcgaattc
catccgtggaattgcgcgccgaacgaacccgatgtgccgggccgtctggtgttcgatctc
gatcccgcgccgggcgtcaactttaccgatgtcatcaccgccgcgcgcgatctgcatgat
cggttgtcgtcgctcggactcgagagcttctgcaagaccaccggcggcaagggcctgcat
gtggtcacgccgttgaaggatgcgaagaaggatcgcatcgactggaaagcggcgaaggcc
tttgcacaggcggtctgtcaggcgatggcggcggatgcgccggagcgctatctcatcaac
atgtcgaagaagaaacgcgagggcaaaatcttcctcgactatctgcgcaacgaccgcatg
tcgacggcggtcgcgccgttctcgccgcgcgggcgcgacttcgctccggtggcatggccg
atcacctgggctcaggcgcgcacgggcctcgatccgctgaagttcacgctacgcaccgta
cccgcgctggtgaagacatcgaaggcgtgggccggttacgaccgcgccgcgcgctcgctg
aaagatgcgatccggaaaatgggtggctga
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