Ochrobactrum quorumnocens: CES85_3962
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Entry
CES85_3962 CDS
T05040
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
och
Ochrobactrum quorumnocens
Pathway
och03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
och00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CES85_3962 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
och03400
]
CES85_3962 (mfd)
Enzymes [BR:
och01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CES85_3962 (mfd)
DNA repair and recombination proteins [BR:
och03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CES85_3962 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
UB2H
AAA_22
RecG_dom3_C
NitrOD2
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASV83184
UniProt:
A0A248U908
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All DBs
Position
2:139491..143006
Genome browser
AA seq
1171 aa
AA seq
DB search
MPVFSKLGLKTSPGVKNSRHIVIDGVADGFEAFCLARLVEEIGERGPVMYIVRDGQRVAD
LEQVLNFVLPDLPVLHLPAWDCLPYDRVSPGADASARRLAALAALASLKKSPHPAVIITT
ANAILQKLPPQAAIAEQVISARPGNQLNMNDLGARLERNGFERVSTVRDIGEYAVRGGIL
DLYAPGSEEPLRLDFFGDTLETIRAFDPASQRTTGARKEFVLQPMSEISLSPDMISRFRK
NYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDHAGDMPVVFDHLVHEA
LTERHTMVVDHYEARLRQAEGKEPGSDAIPYKPVKPEALYLTPREVEAVAASVGLRIDLT
PFGTPEVSGRSIIHADVHKGRNFAEERAATDVNLFEAVVKYIADLRVAGKKVLVAAWSEG
SLDRLLQVLDEHGLEKIETVDRLSTVKALSRDKITAAVLAVESGFDAGDLVVVAEQDILG
DRLVRRTKRRKRDQDFISEVASLSAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRFGSEGSEAVLDKLGGGAWQMRKAKLKKRLLEIAGHLIQIAAER
QMRGAPSMTPPDGLYAEFAARFPYDETEDQQRAIDAIADDLAAGKPMDRLICGDVGFGKT
EVALRAAFVAALSGFQVAVVVPTTLLSRQHFKTFSARFHGLPVNVAHASRLVGAKELAAT
KKGLEDGTVDIVVGTHALLGNSIKIKNLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
CPRIADLTEIEDFLKEHVPELKVAVAHGQMAPGMLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLSQLYQLRGRVGRSKQRAFALFTLPAGRTLTATAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGTIEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLAEPQDIDAFGAELIDRFGPMPEEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRNAIFANPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWATPEKRLNGSAVIMTQLAKIATGG
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtattcagcaaactcggtctcaaaaccagtccaggcgttaaaaacagcaggcat
atcgtcatcgacggtgtcgccgatggtttcgaagcgttctgccttgcgcgtctggtcgag
gagatcggggagcgtgggcctgtcatgtatattgtccgcgatggtcagcgggttgctgat
ctggaacaggtactgaatttcgttttgcctgatctgccggttctgcatctgccggcatgg
gactgtcttccctatgatcgtgtgtcgccgggggctgatgccagcgcgcgcaggcttgcg
gcacttgccgctttggcttccttgaaaaagtcgccgcatcctgcagtcatcatcacaacg
gcgaatgccattctgcaaaagctgccgccacaggccgcgatcgccgagcaggtgatttca
gcacgtcccggcaatcagctcaacatgaacgatctgggtgcacggctggaacgcaacgga
tttgagcgcgtctcgaccgtgcgtgacatcggcgaatatgcggttcgcggtggtattctc
gatctttatgcgccgggttcagaagaaccgcttcgtctcgatttctttggtgacacactc
gaaaccatccgcgctttcgacccggcttcgcagcgcaccacgggtgcgcgcaaggaattc
gtgctccagccgatgagcgaaatttcgctttcaccggatatgatcagccgatttcgcaag
aattatgtggccatgttcggcgcgccacagcgcgacgatgcactttatcaggcaatcagt
gaaggtcgccgctttgcgggtatggaacactggctgccgctgttctacgataatctcgaa
accgtgttcgaccatgcaggcgatatgccggtggtattcgatcatctggtgcatgaagcg
ctgactgagcgtcatacgatggtcgtggatcattatgaggcgcgtctgcgacaggccgaa
ggcaaagagccgggcagcgatgctattccttataagccggtcaagccggaagcactttat
ctgacgccacgggaagttgaagcggttgccgcgtctgtcggcctgcgtatcgatctgaca
ccatttggcacaccagaagtctctggccgttcgatcattcatgctgatgtgcacaagggc
cgcaactttgctgaagaacgtgccgcaaccgatgtgaacctttttgaagcggtggtgaaa
tacatcgccgatttgcgcgtcgcgggcaaaaaagtgctggtggctgcgtggtccgaaggt
tcgctcgatcgtctgctgcaggtgctcgatgagcacggacttgagaaaatcgaaaccgtc
gatcgcctctcgacggtcaaagcactctcgcgtgacaagattacagcagctgttcttgcc
gttgagagtggctttgatgcgggcgatctagtcgtcgttgccgagcaggatattctcggt
gatcgccttgtgcgccgcaccaagcgccgcaaacgcgatcaggatttcatttccgaagta
gcatcgctctcagctggtgatatcgtcgtccacgtcgatcatggtatcggtcggtttatt
ggcctcaagacaatcacggcggcgggtgcgccacatgactgtctggagattcattatgca
ggcgatgatcgtctgtttctgccggtcgaaaatatcgagttgctttcgcggtttgggtcg
gaagggtctgaagccgttctggataagctcggcggcggcgcatggcagatgcgcaaggca
aagctcaagaagcgcttgctggagattgcggggcatctgatccagattgccgctgaacgc
cagatgcgcggcgcgccatccatgacgccgcccgatggactttatgctgaatttgcagcg
cgctttccttatgatgaaaccgaagaccagcagcgtgcaatcgatgccattgccgatgac
cttgcggcaggcaaaccaatggatcgtctcatctgcggtgacgttggtttcggcaagacc
gaagtagcactgcgcgccgcctttgttgcagcactaagtgggtttcaggtggcggtggtg
gtgccaacgacgcttctgtcacgtcagcacttcaagactttttccgcacgtttccacggc
ctgcccgtcaatgtagcccacgcctcgcggcttgttggcgcaaaagaacttgccgccacc
aaaaagggcctcgaagacggcactgtcgatatcgtcgttgggacgcacgctctgcttggc
aattctatcaagatcaagaatcttggtctgcttatcatcgatgaggagcagcattttggc
gtcaagcacaaggagcgactcaaggagctgaagtcagacattcatgtgctgacgctgtca
gcaacgccgatcccacgcacattacagctcgctttgaccggtgtgcgcgagctgtcgctt
atcaccactccgccggtggatcgtatggcggtacgcacttttgtttcgcctttcgatccg
ttggtgatccgcgaaacgttgctgcgcgaacgctatcgcggcggtcagagcttttatgtt
tgtccacgcattgccgatctcaccgaaattgaggatttcctcaaggaacatgttcccgag
ctgaaagttgccgtggctcatggtcagatggcaccaggtatgcttgatgacattatgaat
gccttctacgacggccaatatgatgtgcttttgtccacgaccatcgtggaatcgggcctc
gatattccgacggccaatacaatgattgtgcatcgcgcggatatgtttggtctgtcgcag
ctttatcagttgcgcggacgtgttggacgctccaagcagcgtgcctttgcgctctttaca
cttcctgccggacgcacattgacggctactgccgagcgtcgcctcaaggttctacagtcg
cttgatacactcggtgcaggcttccagcttgcaagtcacgacatggatattcgcggtgca
ggcaatctactaggcgaagagcagtcgggtcacatcaaggaagtgggctttgagctttac
cagcagatgctggaagaggctgttgccaccctcaagggcacaattgaggtcgaagacagc
cagtggtcgccacagattgcgattggtacggctgttatgatcccggaagcttatgtgccg
gatctgcagttgcgtctagggctttatcgccgtctcgccgatctggctgagccacaggat
atcgatgccttcggcgcagaactgatcgaccgcttcggcccgatgccggaagaagtgcag
catttgctcaagatcgtctatatcaaggctctgtgccgccgcgccaatgtcgaaaaactc
gatgccggtccaaagggcgtggttatccaattccgcaacgcaatctttgcaaacccagtt
ggtctcgtgaagatgatcggggaacagggttcaatggccaagatcagaccagatcagagt
atcgttttcatccgcgactgggcaacaccagaaaagcggcttaacggctcggcagttatc
atgactcagcttgcaaaaatcgctactggtggctga
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