Oceanihabitans sp. IOP_32: FEZ18_05735
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Entry
FEZ18_05735 CDS
T06249
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oci
Oceanihabitans sp. IOP_32
Pathway
oci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FEZ18_05735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oci03400
]
FEZ18_05735 (mfd)
Enzymes [BR:
oci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FEZ18_05735 (mfd)
DNA repair and recombination proteins [BR:
oci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FEZ18_05735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
QFZ54323
UniProt:
A0A5Q0JZ88
LinkDB
All DBs
Position
complement(1376305..1379745)
Genome browser
AA seq
1146 aa
AA seq
DB search
MSQSILSQTYAQTLQMQNLQTAIAKNKPLDPAQDQSKIHLKGLVGSSFSFVISNVFKQSK
NPFLIIFNDKEEAAHYLNDLEQLCNPKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRI
NSQKKPAIIVTYPDALFEKVVTRKELERNTLKVALNDKISIDFVNEVLFEYQFKRVDFVT
EPGEFSVRGGIVDVFSFSHDKPYRMEFFGDEVDSIRTFDVETQLSLEQIKKINIIPNVAN
KLLNENRQSFLKYIAQKTVVCFKNTDLFFARIDDFYEKAQDAFKSLDSELKHAKPEALFT
NSVLLKKQLLDFSLLEFGSTSVFRNKGMASETKQSVSFAETSASQTSRNEVKEISFNTTP
QPSFNKQFNLLIEDLNTNHEKGYTNYIACVSEQQAKRFHDIFDDSNLDVKQYQTIILSLY
QGFIDHDSKIVCYTDHQIFERYHKFHVKNGFAKKQAITLKELTNLDIGDYVTHIDHGIGR
FGGLQKIDVEGKKQEAIKLVYGERDILYLSIHSLHKITKFNGKDGKAPKIYKLGSNAWKT
LKQKTKARVKHVAFNLIKLYAKRKTEKGYQYNPDSYMQHELEASFIYEDTPDQSTATADV
KADMESTRPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTVLAYQHSRTFKSR
LKDFPVTVDYVNRFRTAKEKRETLEGLENGNVDIIIGTHQLVNKNVKFKDLGLLIVDEEQ
KFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQFSLMAARDLSVITTPPPNRYPIESHVIR
FNEETIRDAVSYEIERGGQIFFIHNRIENIKEVAGMLQRLVPDAKIGIGHGQMEGKKLEE
LMLSFMDGAFDVLVSTTIVESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFC
YFITPEYSAMTDDARKRITALEQFTELGSGFNIAMKDLEIRGAGDLLGGEQSGFINEIGF
DTYQKILNEAIEELKENEFKDLYDEDETDKVYVKEVTIDTDFELLFPDDYVNNIAERLNL
YTQLNQLKTEVDLQKFESNLIDRFGELPSPVVDLLDSVKIKWMATTLGFEKVIMKKGKFI
GYFITDQQSKFYQSDSFTKVLKFVQSNPNICKIKEKQTRNGLRLLLTFDAVKTVQQALAI
LKPITA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcaatctatcctctcgcaaacctatgcacagactttgcaaatgcaaaatctgcaa
actgccattgccaaaaacaaacctttagatcctgcacaagaccagtctaaaatacattta
aaaggacttgtaggatcgtctttttctttcgtgatatcgaatgtttttaaacaaagtaag
aatccttttttaattatttttaacgataaagaagaagcggcacactacctaaacgattta
gagcaattgtgtaacccaaaagatgtgttgttttatccaggtagttaccgcaggccttat
caaattgaagaaaccgataatgctaatgtactgcttcgtgccgaggtgttaaaccgtatt
aactctcaaaaaaaaccagccataattgtaacttatcccgatgcgctgtttgagaaggta
gtcactaggaaagagttggagcgtaatacattaaaagtcgcgctaaacgataaaatatct
atagattttgtaaacgaagttttatttgaatatcaatttaaacgtgtcgattttgtaacc
gaacctggtgagttctcagtgcgtggtggtattgtagatgtattttcattttcgcacgac
aagccatatcgcatggaattttttggtgatgaggtcgatagcattcgaactttcgatgta
gaaacccagctttctttagagcaaataaagaaaattaatatcatccccaatgttgccaat
aaattactaaacgaaaaccgccaaagttttctaaaatatatcgctcagaaaacagttgtc
tgttttaaaaacaccgatttgttctttgcgcgaatagacgatttttatgaaaaagcccaa
gacgctttcaaatcactcgactccgaattaaaacacgcgaaaccagaagccctattcacg
aattcagttttactaaaaaaacaattattagatttttctttactagaatttggaagcaca
tctgtttttagaaacaaaggcatggctagcgaaacgaaacaatctgtttcatttgcagag
actagtgcgtcgcaaacgtctcgtaacgaggtaaaagaaatatcttttaataccacacca
cagccttcattcaataagcagtttaatcttttaatagaagatttaaatacgaatcatgaa
aagggctacaccaattatattgcttgtgtaagcgagcagcaagctaaacgctttcacgat
attttcgacgattctaatcttgacgttaagcagtatcaaactattattttatccttatat
cagggttttatagatcacgacagtaaaatcgtgtgttataccgaccatcaaatttttgag
cgttatcataaatttcatgttaaaaatggttttgccaaaaaacaagccatcactttaaag
gagcttactaatttagatattggcgattatgttacgcatatcgatcacggtataggacgc
tttggtgggcttcaaaaaattgatgttgaaggcaaaaaacaagaggccataaaattggtt
tacggggagcgggatatattatatttaagcattcattccttacacaaaatcactaagttt
aacggtaaagatggtaaggctccaaaaatttataaattgggcagtaatgcctggaaaacc
ctaaaacaaaaaacaaaagcacgtgttaaacatgtggcttttaatttgataaaactttac
gccaaacgtaaaaccgaaaagggctaccaatacaatccagatagttatatgcaacacgag
ttggaggcgtcttttatttatgaagacacacccgaccaaagcacagctaccgccgatgta
aaggcagatatggaaagcacgcgcccaatggatcggttagtttgtggcgatgtgggattt
ggtaaaaccgaagtggctattcgcgccgcatttaaagccgtcgataacgggaaacaagtt
gctgtattagtgccaacaaccgtactcgcctatcagcattccagaacatttaaatcgcgt
ttaaaagactttccagttaccgtagattatgtaaaccgctttagaacagccaaagaaaaa
cgagagactttagagggtttagagaacggaaacgtcgatattattattggcacgcaccaa
ttggtaaacaaaaatgtaaagtttaaagatttaggattgcttatcgtagacgaagaacaa
aaatttggcgttgccgtaaaagaaaagctaaagaccttaaaagacaacgtcgatgtgtta
acccttaccgctactccaataccgcgtaccttacaatttagtttaatggcagcacgagat
ttatcggtcattacaacaccgcccccaaatcgataccctatagagagtcatgttattcgt
tttaacgaagaaaccattcgtgatgcagtaagttatgagattgagcgtggcggacaaata
ttctttattcataatcgtatagaaaacataaaagaagtggctggcatgttgcaacgtcta
gtgcccgatgctaaaattggtattggtcatgggcaaatggagggtaaaaaacttgaagaa
ctcatgctgtcttttatggatggtgcttttgatgttttagtgagtaccaccattgtagaa
agtggccttgatgtgccaaatgccaacacgatttttattaataatgccaataattttggt
ttgagtgatttgcaccaaatgcgtggtcgtgttggtagaagcaataaaaaggccttttgt
tactttataactccagagtattctgcaatgaccgatgatgctagaaaacgcatcacggcc
ttagagcaatttacagagttgggtagcggttttaatatcgctatgaaagatttagaaatt
cgaggggcaggcgatctacttggtggcgaacaaagtggttttataaatgaaataggattt
gatacctatcaaaaaatacttaatgaagccattgaagaacttaaagaaaacgagtttaaa
gatctttacgatgaagatgaaaccgataaagtgtatgtaaaagaggtaactatagacacc
gatttcgagctgcttttcccagacgattatgtaaataatatagcagaacgattaaattta
tatacccaacttaatcagttaaagaccgaagtcgatttgcaaaagtttgaatcgaacctc
atagatcgttttggagaattaccatcaccagtagtcgatttgttagatagcgttaagata
aaatggatggctacaacattaggattcgaaaaagttattatgaaaaaaggtaaatttatt
gggtattttataaccgatcaacaaagtaaattttaccaaagtgatagttttactaaagta
cttaaatttgtacaatcaaaccctaatatttgtaagataaaagaaaagcaaactcgaaat
ggtttaaggttattgcttacttttgatgcagttaaaacagtacagcaagccttggcgatt
ttaaaacccattacggcttaa
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