Oceanispirochaeta crateris: EXM22_08770
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Entry
EXM22_08770 CDS
T06177
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ock
Oceanispirochaeta crateris
Pathway
ock03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ock00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXM22_08770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ock03019
]
EXM22_08770
Enzymes [BR:
ock01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXM22_08770
Messenger RNA biogenesis [BR:
ock03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXM22_08770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QEN08073
UniProt:
A0A5C1QIU0
LinkDB
All DBs
Position
complement(1923729..1925567)
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AA seq
612 aa
AA seq
DB search
MKFTEFNFNENIQKGIESAGFKECMPVQEQTFQTILENKDVFAQSQTGTGKTAAFLISIF
QLLGEDKHFKGQKALIICPTRELVVQIEEEAKVLGQHLDFRIGSFYGGVGYNEQEQSLAD
GCDILIGTPGRLIDFSKSGKIRFSEMGILVIDEADRLFDMGFLPDLRKILSKMPAADMRR
TMLFSATLNAKVGNLAWEYMNNPGEIVIEPEQLAVEAITQELYHVSAEEKMKLLLGVMKR
DKPDTAIIFANTKHTTYEVAKRLEHNGYHAKCLMGDLPQKKRLKIVEEAKEGKTPFLVAT
DVAARGLHINDLSLVVNYDVPTDAESYVHRIGRTARAGKTGKAITLACEKFVYGLPAIEK
LTGQKIPVSWADEDLMVEDKSEGMRFHFDKRAGASGDHQGRRDGRGRPRNGGGVSRKYSG
GNKRPLDARAARVQSAVLAVSGTMDSVDEEIKKSNTHNGSEKQSISRNRKRKNSYKGQKP
TDNRSRNRGENKAPASLPMERVSSKNSIEDRLAYYKAKYGEDFQADKGTIKSFKGGSKSG
NGGNRKRSGRPVAQRSGNKGPVNNSHANKGATNKNSSSKTSQNPKSARPVNQVKEKAPVQ
KKGLLSRLFGKK
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgaatttaattttaatgagaatatccagaagggtatagaatcggcaggc
tttaaagagtgcatgccagtacaggaacagacgttccagactattttagaaaacaaagat
gtatttgcccagtctcagaccgggacaggaaagaccgcagcgtttctaatttcaattttt
caattattaggcgaagataaacactttaaggggcagaaagccctcatcatttgccccaca
agagaactggtcgttcaaatcgaagaagaagctaaggttctggggcagcaccttgatttt
agaattggaagtttttacggaggtgtgggatacaacgaacaggaacaatccctggccgat
ggatgcgatatccttattggcacccctggaaggctgatcgactttagtaaatcagggaaa
attcgattttcagagatgggaattcttgtcattgatgaggctgatagactttttgatatg
ggattcctacccgacctcaggaagattttgagtaaaatgcccgctgcggacatgaggcgg
accatgctttttagtgctaccttgaatgccaaggtggggaatcttgcctgggagtatatg
aacaatcccggtgaaattgtgattgaacccgagcagcttgccgtagaggccatcactcag
gaactctaccatgtcagtgctgaagaaaaaatgaagcttcttctgggcgtaatgaagcgg
gataaacccgatacagctattatctttgccaatacgaaacatacaacctatgaggtcgct
aaacggctggagcataacggatatcatgcgaagtgccttatgggcgatcttccccagaaa
aagagactcaaaattgttgaagaagccaaagagggaaaaacaccctttcttgtggcgaca
gatgtcgctgccagaggactccatatcaacgatctttctctggtagtcaattatgatgtg
cctacagacgcagagagttatgtccatcgaattggtagaactgcccgtgcaggaaagact
ggtaaagccatcactctggcctgtgaaaagttcgtatacggactacctgccattgaaaaa
cttacgggacagaaaatacccgtatcctgggccgatgaagatctgatggttgaagacaag
agtgaaggaatgcgttttcactttgataaaagggcgggagcttccggagatcatcaagga
cgccgtgatggacgaggccgtcctagaaacggtggtggtgtcagccggaaatacagcgga
ggaaacaaacgtcctctggatgccagagccgcccgtgttcagtctgctgttttggccgtg
tcgggaaccatggattccgttgatgaagaaatcaaaaagagcaatacccacaatggcagt
gaaaaacagagcataagccgaaacaggaaacgtaaaaactcatacaagggacaaaagcct
acggataatcgatcccgcaaccgtggagagaacaaggctcccgccagtcttcccatggaa
cgggtcagcagtaagaacagcattgaagatagactagcctattacaaagccaaatacggt
gaggattttcaggcagataaagggactatcaaatctttcaaaggcggatcaaagtccgga
aacggcggcaacaggaagagatccggccgcccggttgctcagcgttccggaaataaggga
ccagtcaataatagccatgcaaacaaaggggcaacgaataagaacagttcctctaaaaca
tctcagaacccaaagagtgcccgccctgtaaatcaggtgaaagaaaaggctccagttcaa
aagaaaggacttctttccagactgtttggaaaaaaataa
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