Oceanisphaera avium: CBP12_01675
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Entry
CBP12_01675 CDS
T04855
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ocm
Oceanisphaera avium
Pathway
ocm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBP12_01675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocm03400
]
CBP12_01675
Enzymes [BR:
ocm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBP12_01675
DNA repair and recombination proteins [BR:
ocm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CBP12_01675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ART79017
UniProt:
A0A1Y0CVT6
LinkDB
All DBs
Position
complement(354500..357970)
Genome browser
AA seq
1156 aa
AA seq
DB search
MIQIASPTPRPKASLGQLLGSSLSLAIAQQVIREQQWVLLVVPDTPTALRLELEVRHLLK
THSSASDPLPVQLFPDWETLPYDQFSPHQDIISQRLETLYGIPALKRGVLIVPITTLMLR
TPPRAWLEQNSLLLKTGDKLDMHSLRSRLERAGYRAVEQVLTHGEYAARGALLDLYPMGS
AQPFRIDFFDDEIDTLRPFDPDSQRSRETVEAVRLLPAREFPTDANAIERFRGQYRERFT
LRNEPESLYHRVSQSQFPAGIEHYFPLFFEHTETLFNSLPESLLVLTVDDLSAPAETFWQ
DVQARYEDRRYDTMRPILPPAELYLSPNEVLAQLNHYPQLQLSHTPVLEKGDRLNAPISP
LPELEIEHQKTQPLSRLLAFCQEFTGRVLFSVETAGRREALIELFAGSAIKPWPYNSLDE
FSAGKDPFGLLVGPLSQGFILQAKAAKNSVALICEGDLLGGRVISRRRREKSKSINPDTL
IRNLAELSIGQPVVHLDHGVGRYTGLQTLEAGGLTSEYLTLEYAAGDKLYVPVTALHLVG
RYSGADDPSLNKLGNETWAKAKAKAAEKVRDVAVELLDVYARRAAQPGQAMAHDKAAYRQ
FADSFPFEETDDQLRAINAVLTDMTQPKAMDRLVCGDVGFGKTEVAMRAAFVAVHHGKQV
AVLVPTTLLAQQHFDNFRDRFANWPVRIEMISRFKTGKEQDKVLAAMEDGSLDIVIGTHK
LLSKNIRFKDLGLLIVDEEHRFGVRQKDQIKALRADVDILTLTATPIPRTLNMAMGGMRD
LSIIATPPAKRLAVKTFVKESDPATIREAILRELKRGGQVYYLHNDVQTIEHTAEHLATL
VPEARIAVAHGQMRERELERVMTDFYHQRYNVLLCSTIIETGIDVPTANTIIMDRADKLG
LAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTSDAKKRLEAISALEDLGAGFALATHDLEI
RGAGELLGAEQSGQITTIGFSLYMEMLEQAVKALQSGKEPNLDQLLRSQTDVELRIAALL
PEDYIPDVNMRLSMYKRIATAEDDAQLRELQVELIDRFGLLPEPSKNLMALASLKLRANP
LGIEKIDASAKGGNITFSQDAPIDPMFLVGLLQSQPRVYKMDGPTKLSFAIPSHDAPTRL
ALINDLLTELSKHQTA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgatccagatagccagccctacccccagacccaaagccagccttggccaactgcttggc
agcagcttaagtctcgccatcgcgcaacaggtgatccgcgagcagcaatgggtgctgttg
gtggtgccggatacgcctacagcactgcgcttagaactagaagtacgccatctactcaag
acacacagcagtgctagtgatcccttgccggtgcagttatttccggattgggaaacgctg
ccctatgatcagttttcaccgcaccaagatattatttctcagcgcttagaaacactctat
ggcatacccgccctaaagcgcggcgtattaattgtgcccataactactttaatgctgcgc
actcccccaagagcctggctagagcaaaatagcttactattaaaaactggcgataaactc
gatatgcacagtttgcgctcccgcctagagcgcgcaggctatcgcgccgtagagcaagtg
ttaactcacggcgaatatgcagcgcgcggagccctactcgacttatatcccatgggctcg
gcacagccatttcgtattgatttttttgatgatgaaattgataccctgcgcccgtttgat
cccgacagccaacgctcacgagaaacggtggaggcagtgcgtctcttgcccgcccgagag
tttccaaccgatgccaacgccatcgagcgctttagaggccagtaccgtgagcggtttacg
ctgcgtaatgaacctgagtctttgtatcacagagttagccaaagccaatttccggcgggc
atagagcactattttccgctattttttgaacataccgaaacgctgtttaattcgctgccc
gagtcgctcttagtgcttacggtcgatgacttaagtgcccccgctgaaactttttggcaa
gacgtacaagcgcgttatgaagacagacgctacgacactatgcgtcctatcttgccgcct
gcagagctttatctgagccccaacgaagtattagcgcaattaaatcactatccgcaactg
caactaagtcacactccggtacttgaaaaaggcgatcgccttaatgcgcctatcagcccg
ctgccagagctagagattgaacaccaaaaaactcagcctctaagtcgcttactggctttt
tgccaagaatttacaggccgagtgctattttcagttgaaacagccggtcgtcgcgaagcc
ttaattgagttgttcgctggctccgccattaagccttggccttataacagtctggatgag
tttagtgctggcaaagacccctttggtttattagtaggcccgctgtctcaaggctttatt
ttacaggccaaggccgctaaaaatagcgtggcgctgatttgtgaaggcgacttactcggc
gggcgggttatttctcgtcggcgccgtgaaaagtctaaaagcattaaccccgacacctta
attcgtaatttagccgaactctcgattggccagccggtagtgcacctagaccatggcgtg
ggccgctataccggtttacaaaccttagaagccggcggtctcacctcagaatacttaacg
ctggaatatgcggcgggcgataaactgtatgtgccggttaccgcactgcatttggtgggg
cgctacagtggcgccgacgatcctagcttaaataaattaggtaacgagacttgggcaaaa
gccaaagccaaagcggcagaaaaagtccgcgatgtagcggttgagctattagatgtttat
gccagacgtgccgctcagccgggccaagccatggctcatgataaagctgcgtatcgccag
tttgccgactctttcccttttgaagaaactgacgatcaactgagggcgattaacgccgta
ctcaccgacatgacgcagcctaaagccatggatcgcttagtctgtggcgatgtcggcttt
ggtaaaactgaagtggcgatgcgcgccgctttcgtggccgtacaccatggtaaacaagtg
gcggtattagtccccaccactttattagcacagcaacactttgataactttagagaccga
tttgctaactggccggtgcgcattgagatgatcagtcgctttaaaaccggtaaagagcaa
gataaagtgttggcagcgatggaagatggcagcctagatatagtgattggcacccataag
ctattaagcaaaaatattcgctttaaagacttaggcttgttaattgttgatgaagagcat
cgctttggcgtgcgtcaaaaagatcaaattaaagcgctgcgcgccgatgtggatatttta
actctcaccgccacgccaatcccacgcacccttaatatggccatgggcggcatgcgcgac
ttatccattattgcgacgccccccgctaagcgcttggccgtaaaaacctttgttaaagaa
tcagatcccgccaccattcgtgaagcaattttacgcgagctaaagcgtggcggccaagtg
tattacttacataacgatgtacaaaccatagagcatactgcagagcacttagccacctta
gtgcccgaagcgcgcatagccgtggcacacgggcaaatgcgtgagcgcgaattagagcgc
gtaatgaccgatttttatcatcagcgttataacgtcttactctgctccactattattgaa
accggtattgatgtacccacggctaacaccatcattatggacagagccgataaactcggt
ttagcacaattacatcagttacgtggccgtgtggggcgctctcaccatcaggcctatgct
tatttgctcacgcctcatcctaagcgcatgactagcgatgctaaaaaacgtctggaagcc
atctctgcattagaagatttaggcgcaggctttgcactggcaacccatgacttagaaatt
cgaggcgccggcgagttactcggggccgagcaaagtggccagatcacaactattggcttt
agtttatatatggaaatgctcgagcaggcggtaaaagcgctgcaatctggcaaagagccc
aatcttgatcagttattgcgcagccaaactgacgttgagctgcgaattgcggcgctatta
cctgaggattatattcctgatgtgaatatgcgtttatctatgtataagcgtattgctacc
gccgaagacgacgctcaacttcgcgagttacaagtcgagcttattgaccgttttggctta
ttacctgagcccagtaaaaacttaatggcgctagccagccttaaattaagagccaatccg
ctaggtattgagaaaattgatgccagtgctaagggcggcaatatcacctttagccaagat
gcgcctatcgaccctatgttcttagtggggctcttgcaaagccaaccgcgagtctacaaa
atggacgggcctaccaagcttagctttgcgatcccaagtcatgatgcgccgacgcgctta
gcactaattaatgacttattaaccgagctaagtaagcatcaaaccgcgtaa
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