Afipia carboxidovorans OM4: OCA4_c28780
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Entry
OCA4_c28780 CDS
T01967
Name
(GenBank) peptidoglycan binding domain-containing protein
KO
K21470
L,D-transpeptidase YcbB
Organism
oco
Afipia carboxidovorans OM4
Brite
KEGG Orthology (KO) [BR:
oco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oco01002
]
OCA4_c28780
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
oco01011
]
OCA4_c28780
Peptidases and inhibitors [BR:
oco01002
]
Cysteine peptidases
Family C82
OCA4_c28780
Peptidoglycan biosynthesis and degradation proteins [BR:
oco01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
OCA4_c28780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AEI03989
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All DBs
Position
3067134..3069272
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AA seq
712 aa
AA seq
DB search
MHDLSTGRSGYDRMLAAVAATFLLAGTVTFAHAEPASEAAISAAVPMPDTSLVPPPTAAD
VKLDAVKPAASAQNEAVEAAKPAATEPAKSESAETRTPAPAAPAAEAAKSEPAKSEASKS
EAPAPAATNSDAAKAQTPATTAEPAVAALDPFGEALRDLIAAKGAKYFDRKKERAAVEAF
YKDRNYAPLWTKGAAASPRASEAIARLKKADEDGLDAGDYPIPDFAAATTPEAQADVELR
LTESALDYARHAQSGRMHWSQVSGDIQYPDHTPDPTEILINISTARNAGAALETYNPPHK
AFQQLRAKLTELRGDTDESHKIADGETLRFVKATKKNPNPTVMEDARVPALRAKLGITEN
ASDTHYDATVATAVRKFQAANGLKATGVLDKQTLAALNGPKNDRKIDIVRVNMERWRWLP
RDLGAKALGDAYVVLNIPDYSLKLMHNGAPVWKTRVVVGKPGKHATPELTETMKYITVNP
TWNVPPSIIYNEYLPALQQDPTVLERMGLKLQRNPDGTIRISQPPGERNALGRIRFNFPN
KFLVYQHDTPDKHLFAKTERAFSHGCMRVQNPDQYAANLLSIALPKDHYTPEKIRGMYGR
SEININFPTPIPVNIVYHTAFVDDAGVLEFRKDIYGRDARMISLLKGSGKNLEAVVAHSQ
PNYVKPTNNINIPGDGYADRSSGPNFFELLFGGGRSAQVEQEPRRRRQQQRY
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacctctcgactggccgcagcggttacgatcgcatgctggcagccgtagcagcg
acgtttttgctcgcagggaccgtaacgttcgcccatgccgagccggcgtcggaagcagcc
atcagcgccgcagttcccatgcccgatacctcgctcgtgccgccgcccaccgcggccgac
gtcaagctcgatgcggtcaagcccgcagccagcgcgcagaacgaggccgtcgaggctgca
aaaccggctgccactgagccggcaaaatctgaaagtgcagaaaccaggacccctgctccg
gcggcaccggcagccgaggcagcaaagagcgaacctgccaaatcggaagcaagcaagtcc
gaggcgcccgcgcctgccgcgaccaattctgacgccgccaaggcacagacgcctgccacg
acggccgaacccgccgttgccgcgctcgatcccttcggcgaagcgctgcgcgatctgatc
gcggccaagggcgccaaatatttcgatcgcaagaaagagcgcgccgcggtcgaggcgttc
tacaaggaccgcaactacgcgccgctgtggaccaagggtgccgcagcaagcccgcgcgca
agcgaggcgatcgcgcggctgaagaaggccgacgaggacgggcttgatgccggcgactat
ccgattccggatttcgccgcggccacgacccccgaggcacaggccgacgtcgagctgcgg
ctcactgagagcgcgctcgattatgcccgccatgcccagagcggccgcatgcactggtcg
caggtgtccggcgacatccagtatccggatcacacgccggatccgaccgagatcctcatc
aacatctcgaccgcgcgcaatgccggcgcggcccttgagacctacaatccgccgcacaag
gccttccagcaattgcgggcgaagctcaccgaactgcgcggcgataccgacgaaagccac
aagatcgccgatggtgagacgctgcgcttcgtcaaggcaaccaagaagaacccgaaccct
accgtcatggaagatgcgcgcgtgccggcactgcgcgccaagctcggcatcaccgagaac
gccagcgacacccattacgatgcgaccgttgccactgccgtgcgcaaattccaggccgcg
aacggtctcaaggccaccggtgtcctcgacaagcagacgcttgccgcactgaacgggccg
aagaacgatcgcaagatcgacatcgtccgcgtcaatatggagcgctggcgctggctgccg
cgcgacctcggcgccaaggcgctgggcgatgcctatgtcgttctcaacattcccgactat
tcgctcaagctgatgcacaacggcgcgccagtgtggaagacgcgcgtcgtggtcggcaag
ccgggcaagcatgcgacgcccgagctcaccgaaaccatgaagtacatcacggtcaatccg
acctggaacgtgccgccgtcgatcatctacaatgagtatctgccggccctgcagcaggac
ccgaccgtgctcgagcgcatgggcctcaagctgcagcgcaatcccgatggcaccatccgc
atctcgcagccgccgggcgagcgcaacgcgctgggccgcatccgcttcaacttcccgaac
aagttcctggtctatcagcacgacacgccggacaagcatctgttcgcgaaaaccgagcgt
gccttcagccacggctgcatgcgcgtgcagaaccccgatcagtatgcggcaaacctgctc
agcatcgcgctgccgaaggaccactacactccggagaagatccgcggcatgtacggccgc
agcgagatcaacatcaacttcccgaccccgatcccggtcaacatcgtctaccacactgct
tttgtggatgacgcgggagtgctggaattccgcaaggacatctacggccgcgatgcgcgg
atgatctcgctgctcaagggcagcggcaagaatctcgaagctgtggtcgcgcattcccag
ccgaactatgtgaagccgaccaacaacatcaacattccgggtgacggctacgcggatcgc
tcgtccgggccgaatttcttcgagttgttgtttggtggcggccgcagcgcccaggtcgag
caggaaccgcgccgccggcgccagcagcagcgttattaa
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