Ornithinimicrobium cryptoxanthini: NF557_14435
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Entry
NF557_14435 CDS
T08994
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NF557_14435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_14435 (mfd)
Enzymes [BR:
ocp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NF557_14435 (mfd)
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NF557_14435 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
LSDAT_prok
UB2H
MFD_D3
TerB_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
USQ75792
LinkDB
All DBs
Position
complement(3144585..3148175)
Genome browser
AA seq
1196 aa
AA seq
DB search
MSLTPVLSGLVTDPGAAAVVAAAADRERLVDVAVASGARPALVAGLAADRTVLAVTATGR
EADDLAAALAEFLPSEGIATFPSWETLPHERLSPRSDTVGQRLAVLRRLAHPETGDSAYG
PVQVVVASARSLLQPFVAGLGELEPVQLRAGETHEFEDVVQALAAAAYTRTDLVERRGEF
SVRGGILDVFPPTAEHPLRVEFWGDTVEEIRWFKVADQRSLEIADGGLWAPPCRELLLTD
QVRGRAAALADQLPGVGDMLGKLAEGIAVEGMESLAPVLVDAMETLLDVLPERTGVVLFD
PERIRSRAHDLVQTSEEFLGASWAAAAGGATASSGPVDLQEVLGGASYWSLGDMRARALE
LDLSWWTFTAFAGDDELAQFTDGSDDDAARAITVDSSPVEAFRSDTDAVVAALRGWLADG
QRVIVSLEGPGLARRVSEVLAESDIPHRLSSPLEMLDPDVVQVTTGSVGRGFVLPGAKLV
LVGEADLTGQVSTGGTTKDMRRMPSRRRAQVDPLQLRPGDFVVHEQHGVGRFVEMAQRQV
QGAVREYLVLEYASAKRGQPADRLYVPTDQLDQITKYVGGEAPSLHRLGGADWQKTKSRA
KKHVKQIAAELIRLYSARMATQGYAFGPDTPWQRELEDAFAFVETTDQLSSVEEVKADME
KPVPMDRLISGDVGYGKTEIAVRAAFKAIQDGKQVAILVPTTLLVQQHFETFTERYAQYP
VVVRPLSRFQSDKEAKEVIKGLADGSVDLVIGTHRILSTAVTFKDLGLVVIDEEQRFGVE
HKEQLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGGYDERQ
IAAAIRRELLRDGQVFFVHNKVTSIERVASRIRELVPEARVATAHGQMGEHRLEKVVVDF
WEGNFDVMVCTTIVETGLDISNANTLIVDRADQFGLSQLHQLRGRVGRGRERAYAYFTYP
PEKPLTETAVERLQTIATNTDLGSGMAVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
LVSDAVAGFKGELDETPTEIKIELPVDAHLPHEYIPGERLRLEAYTKLAKVTDEAELTEI
EAELVDRYGAPPLPVQTLLEVARLRTLARRAGLTDISTQGQTIRFGPVELRESQQLRLSR
LFPGTILKAATRTILVPVPKTARVGGKVLRDKEILDWASVLIRQVMLDDLAAVAAT
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgaccccagtgctgtccgggctggtcaccgatcccggtgccgctgcggtggtg
gctgctgccgccgaccgcgagcggttggtggacgtcgccgtcgcctccggagcccgtcct
gcactggtggcgggcctggcggccgaccggaccgtcctggccgtcaccgcgaccgggcgc
gaggcggacgacctcgccgccgcgctggccgagttcctcccctccgagggcatcgcgacc
ttccccagctgggagaccctcccgcacgagcggctcagcccgcgcagtgacacagtcggt
cagcgactggcggtgctgcgccggttggcgcacccggagaccggcgactcggcatacgga
ccggtgcaggtcgtcgtggcctccgcccgctccctgctccagccgttcgtggccggactc
ggtgagcttgagccggtgcagctgcgggcgggggagacccacgagttcgaggacgtggtc
caggcactggccgcagccgcctacacccgcaccgacctggtcgagcggcgtggcgagttc
tcggtgcggggcgggatcctcgacgtcttcccgcccaccgcggagcacccgctgcgggtg
gagttctggggcgacacggtcgaggagatccgctggttcaaggtcgccgaccaacgctcc
ctggagatcgccgacggtgggctctgggcacctccgtgccgcgagctgctgctgaccgat
caggtgcgggggcgggcggccgcgctcgccgatcagctgcccggggtcggggacatgctg
ggcaagctcgccgaggggatcgcggtcgagggcatggagtcgctggcacctgtgctggtc
gatgcgatggagactctgctcgacgtgctcccggagcgcaccggcgttgtcctgttcgac
ccggagcggatccgctcgcgcgcgcacgatctcgtgcagaccagtgaggagttcctcggc
gccagctgggcagcggccgccggtggcgccaccgcgtcatccggtccggtcgacctccag
gaggtcctgggcggggcgtcctactggtcgctgggcgacatgcgggcacgcgcactcgag
ctggacctcagctggtggaccttcacagccttcgccggtgacgacgagctcgcgcagttc
accgatggcagcgatgacgacgccgcccgcgcaatcaccgtcgactccagcccggtcgag
gcgttccgcagcgacaccgacgcggtcgtggcggcactgcgcgggtggctcgccgacggc
cagcgggtcatcgtctcgctggagggacccggtctggcgcgtcgggtcagcgaggtgctc
gccgagagcgacatcccgcaccggctcagttctcccctggagatgttggaccccgacgtc
gtgcaggtcaccacaggcagcgtcgggcgcggtttcgtgctgccgggcgccaagctggtc
ctggtcggcgaggctgatctgaccggccaggtcagcaccgggggcacgaccaaggacatg
cggcggatgccgtcgcgccggcgggcgcaggtcgaccccttgcagctgcggcccggtgac
ttcgtggtgcacgagcagcacggcgtcggccggttcgtcgagatggcgcagcggcaggtg
cagggggcggtgcgcgaatacctcgtgctcgaatacgcctcggccaagcgaggtcagccc
gccgaccggttgtatgtccccaccgaccagctcgaccagatcacgaagtatgtcggtggc
gaggcgccgtcgctgcaccgcctgggcggtgctgactggcagaagacgaagtcgcgcgcc
aagaagcacgtcaagcagatcgcggccgagctgatccgtctctacagcgcgcggatggcg
acacagggctatgcgttcggtccggacactccgtggcagcgcgagctcgaggacgccttc
gccttcgtggagaccaccgaccagctctccagcgtcgaggaggtcaaggcggacatggag
aagccggtcccgatggaccggctgatctccggtgacgtgggctatggcaagacggagatc
gcggtgcgggccgccttcaaggcgatccaggacggcaagcaggtcgcgatcctggtgccg
accacgctgctggtgcagcagcacttcgagacgttcaccgagcgctatgcgcagtatccc
gtggtcgtgcggcccctgtcgcgcttccagtcggacaaggaggccaaggaggtcatcaag
gggctggccgacggcagcgtcgacctggtgatcggcacgcaccgcatcctgtcgaccgcg
gtgaccttcaaggacctcggcctcgtcgtgatcgacgaggagcagcgcttcggtgtcgag
cacaaggagcagctcaaggccctgcgcaccaacgtcgacgtgctcgcgatgtcggccacc
ccgatcccgcgcaccctggagatggcggtcacgggcatccgggagatgtcgacgctggcc
accccgccggaggagcggcacccggtcctgacgttcgtcggcggttatgacgagcggcag
atcgccgcggcgatccggcgggagctgctccgtgacgggcaggtcttcttcgtgcacaac
aaggtgacctcgatcgagcgggtcgccagccgcatccgcgagctggtcccggaagcgcgg
gtggcgactgcccacggccagatgggggagcaccggctggagaaggtggtggtcgacttc
tgggagggcaacttcgacgtgatggtctgcaccacgatcgtcgagaccgggctggacatc
tccaacgccaacaccctcatcgtcgaccgggcggaccagttcggcctttcgcagctgcac
cagctgcgtggccgggtgggccgtggccgggagcgggcctacgcctacttcacctatccg
cccgagaagccgctgaccgagaccgcggtggagcggctgcagaccatcgccaccaacacc
gacctcggctccggcatggccgtggcgatgaaggacctggagatccggggcgcgggcaac
ctgctcggcggcgagcagtccggtcacattgccggcgtcgggttcgacctctatgtccgg
ctcgtcagcgatgccgtcgccggcttcaagggtgagctggacgagacgccgacggagatc
aagatcgagctgcccgtcgacgcgcacctgccgcacgaatacatccccggtgagcggctg
cggctggaggcctacaccaagctggccaaggtcaccgacgaggccgagctgaccgagatc
gaggccgagctggtcgaccgctatggcgccccgccgctcccggtgcagacgctgctcgag
gtggcccggctgcgcacgctggcccgccgcgcgggcctgaccgacatctcgacgcaggga
cagacgatccgcttcggcccggtcgagctgcgcgagagtcagcagctgcgcctgagccgg
ctcttcccgggcaccatcctcaaggcggccaccaggactatcctggtgccagtgcccaag
acagcgcgggtcggcggcaaggtgctgcgggacaaggagatcctggactgggcgagcgtg
ctgatccgtcaggtcatgctcgatgacctggctgccgtcgctgccacctga
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