Ornithinimicrobium cryptoxanthini: NF557_15870
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Entry
NF557_15870 CDS
T08994
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ocp
Ornithinimicrobium cryptoxanthini
Pathway
ocp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ocp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NF557_15870 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocp03400
]
NF557_15870 (ligD)
Enzymes [BR:
ocp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NF557_15870 (ligD)
DNA repair and recombination proteins [BR:
ocp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NF557_15870 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
USQ76049
LinkDB
All DBs
Position
3436867..3438582
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AA seq
571 aa
AA seq
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MRATLAIAVPAVSASGVHQQHADGTVGRMPREQGRSPATGDSQEPLAKYRRMRDFSRTPE
PSGAPPAGLEGGDRVFVVQRHRATARHYDFRLEVDGVLASWAVPKGPSLDPEVRRLAIHV
EDHPMEYLHFEGVIPAKEYGGGDVIVWDTGTWEPGNNEDPATAIRAGTLHVIVHGEKLRG
EFMLVRTARQEGDKEQWLLFHKHDEHTVEGWDAEDFPRSVLSGRTNEEVLADPDQLWHSD
RPAGQAAESLRVAVPDPLTEDELSALRDLGSSGTWEVFGQQLRLTNLDKVLFPARQGDEP
VTKREFIEYAGRIAPVLLPYLAGRAVNLHRHPDGAQAKGFWHKEVPDHAPEWLPRWDNPD
AGPGETQTYLVVDEAAALVWAANYGALEWHPWTSPTTAPDCPSYVMFDIDPGEGTTWEEA
LDLARLHRTAFEALHLRAYPKVTGRRGLQVWVPIRRGPSFADTRAWAEKVSRSIGAMVPD
LVSWRWEVKSRKGLARLDYTQNAVNKTLVAPYSPRPSAGAPVSVPITWDELDDPELRPDR
WTVRTVLDRLDEVGDPFQGVLHHDQTLPRVR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
gtgcgagcaaccctcgcgatcgctgtcccggcggtcagtgcgtccggggtgcaccagcag
cacgccgatgggaccgtgggccgtatgccgcgcgaacagggccgctcccccgccaccggg
gactctcaggaaccgctggcgaagtaccggcggatgcgcgacttctcccgcaccccggag
cccagcggcgcgccgcccgcggggctggagggtggggaccgggtcttcgtggtgcagcgc
caccgcgcgacggcgcgacattatgacttccgcctcgaggtcgacggggtgcttgccagt
tgggcggtgcccaagggccccagtctggaccccgaggtgcgccggctggccatccacgtg
gaggaccacccgatggagtatctccacttcgagggcgtgatccccgccaaggagtatggc
gggggcgacgtcatcgtgtgggacaccggcacctgggagcccggcaacaacgaggatccg
gcgacagcgatccgcgccggcacgctgcacgtcatcgtgcacggcgagaagctgcgcggg
gagttcatgctggtgcgcaccgcgcgccaggagggcgacaaggagcagtggctgctcttc
cacaagcacgacgagcacacggtcgagggctgggacgcggaggacttcccccgctccgtc
ctcagcggccgcaccaacgaggaggtcctggccgatccggaccagctctggcactccgac
cggccggccggccaggccgcggagtcgctgcgggtggccgtgccggacccgctcaccgag
gacgagctgtcagccctgcgggacctgggcagctcggggacctgggaggtctttggccag
cagctgcggctgaccaacctggacaaggtgctcttcccggcacgtcaaggtgatgagccg
gtcaccaagcgcgagttcatcgagtatgccgggcgcatcgcccccgtgctccttccctat
ctggcgggccgggcggtcaacctgcaccgacatcccgacggggcgcaggccaagggtttc
tggcacaaggaggtccccgaccacgcgccggagtggctgccgcggtgggacaacccggac
gccggccccggtgagacccagacctacctggtcgtagacgaggccgcggcgctggtctgg
gccgccaactacggcgccctggagtggcacccgtggacgtcaccgaccaccgcccctgac
tgcccgtcatacgtgatgttcgacatcgaccctggcgagggcacgacctgggaggaggcc
ctggacctggcgcggctgcaccggaccgcgttcgaggccctgcacctgcgggcctacccc
aaggtgaccgggcggcgcgggctccaggtgtgggtgccgatccggcgcggaccgagcttc
gccgacacccgcgcctgggccgagaaggtctcccgcagcattggcgcgatggtgcccgac
ctggtcagctggcgctgggaggtcaagtcgcgcaaggggttggcgcggttggactacacg
cagaacgccgtgaacaagacgctcgtcgcgccctacagcccgcggccgtcggcgggtgcg
cccgtgtcggtgccaatcacctgggacgagctcgacgaccccgagctgcggccggaccgc
tggacggtccgcaccgtcctggaccggctggatgaggtgggggacccgttccagggcgtg
ctgcaccacgaccagacgctcccccgcgtgcgctga
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